Pseudomonas glycinae: AWU82_11955
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Entry
AWU82_11955 CDS
T06994
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pgy
Pseudomonas glycinae
Pathway
pgy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AWU82_11955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgy03400
]
AWU82_11955
Enzymes [BR:
pgy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWU82_11955
DNA repair and recombination proteins [BR:
pgy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AWU82_11955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMQ83994
LinkDB
All DBs
Position
complement(3102946..3106395)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRSRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAKEFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVETGAGRERFPAQALPNL
AIEAKATQPLAALSAFLDEFPGRVLFTAESAGRREVLLELLDRLKLRPKTVDSWPDFVAS
KDRLAITIAPLDEGLMLDEPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLTILEIDNQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQSTIEAVREDMLSPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVAELAEGNIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRITALKLQAEQLGIKKV
DGGPQGGRIEFAAQTPVDPMTLIKLIQSQPKRYKFEGATMFKFQVPMERPEERFNTVEAL
FERLIPKTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctccccggtgccgccctgagcctggcgattgccgaggccgccagcgctgccaagcgcttc
acgctgcttttgactgccgacagccagagtgccgaacggctggagcaggagctgagtttc
ttcgccccggatttgccggtgctgcatttcccggactgggaaaccctgccctacgatctg
ttttcgccgcaccaggacatcatctcccagcgcatcgccagcctttatagactgccggag
ctggaacatggcgtgctggtagtgccgatcaccaccgccctgcatcgcctggcgccgacc
aaattcctgctcggcagcagcctggtactggatgtcgggcagaaactcgatgtcgagcaa
atgcgctcgcggctcgaagccagcggctatcgctacgtcgacacggtttacgaacacggc
gagttcacggtgcgtggcgcgttgatagacctgttcccgatgggcagcaaactgccctat
cgcatcgacctgttcgacgacgaaatcgaaaccctgcgcacctttgatccggaaaaccag
cgctccatcgacaaggtcgactcggtcaagctgctgccggccaaggaattcccgctgcaa
aaagacgcggtcacccgcttcaaggcgcgctttcgggagcgcttcgacgtcgacttccgt
cgctgcccgatctttcaggacctgagcagcggcatcacaccggccggtatcgagtactac
ctgccgctgttcttcgaagaaacctcgaccctgttcgattacctgccgcaggacacccag
gtgttctcgctgccgggtatcgagcaggcggcggaaaacttctggaatgacgtgcgcaac
cgttatgaagagcgtcgcgtcgatccatcgcgtcccttattgccgccagccgaactgttc
ctgccggtggaagactgcttcgcccgcctgaagaactggccgcgggtggtcgccagtcag
caggacgtggaaaccggcgccggccgcgagcgctttccggcgcaggccttgccgaatctg
gcgatcgaagccaaggctacccagccgctggccgcgctgtcggcattcctcgacgaattc
cccggacgcgtgctgtttaccgccgaatccgcaggccgccgcgaagtgctgctggagctg
ctggaccgcctgaagctgcgaccgaaaaccgtcgacagctggccggacttcgttgcgagc
aaggatcgcctggcgatcaccatcgccccgctcgacgaaggcctgatgctcgacgagccg
gcgctggcactggtcgcggaaagtccgctgttcggccagcgcgtgatgcagcgtcgccgt
cgcgaaaaacgcgccgacgccaacaacgatgcggtgatcaagaacctcaccgagctgcgt
gaaggcgcgccggtggtgcacatcgatcacggcgtcggccgttatctcggcctgacgatt
ctggaaatcgacaatcaggctgccgaattcctgaccctcgaatacgccgagaacgccaag
ctctacgtgccggtggccaacctgcatctgatcgcccgttacaccggcagcgacgatgcg
ctggccccgctgcatcgcctcggctccgagacctggcagaaagccaagcgcaaggccgcc
gagcaagtgcgcgacgtcgctgccgaattgctcgacatctatgcccgccgcgccgcccgc
gaaggttatgcgttcgccgatccgaaggccgattacgcaaccttcagcgccggtttcccg
tttgaagaaacaccggaccagcaatccaccatcgaagccgtgcgcgaggacatgctttcg
ccgaaaccgatggatcgcctggtctgcggcgacgtcggtttcggcaagaccgaagtggcc
atgcgcgccgcgttcatcgccgtgcacggcggcaagcaggtggcgatcctggtgccgacc
accctgctcgcccagcagcactacaacagtttccgcgaccgtttcgccgactggccggtg
accgtggaagtgatgagccgattcaagtcggccaaggaagtcaacgctgcggtggccgaa
ctggccgaaggcaatatcgacatcgtcatcggcacccacaagctgctgcaggacgacgtc
aaaatcaaaaaccttgggctggtgatcatcgacgaagagcaccgcttcggtgtccgtcag
aaggaacagctcaaggccctgcgcagcgaagtcgacattcttacgctgaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccaccggcgcgacgcctgtcggtgcgcaccttcgtcatggagcagaacaagagcacggtc
aaagaggctttgctgcgagagctgctgcgtggcggtcaggtttactacctgcacaacgac
gtgaagaccatcgagaagtgcgccgctgacctcgccgaactggtgccggaagcgcggatc
ggcatcggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctat
cacaaacgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgatgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaagttcggtttggcgcagttgcaccag
ctacgtggccgcgttggtcgtagccaccaccaggcttacgcctacctgctgaccccgcca
cgccagcaaattactggtgacgcggaaaaacgtctggaggcgattgccaatactcaggat
ctgggtgccggtttcgtgctggccaccaacgatctggaaatccgtggcgccggcgaattg
ctgggcgacggtcagagcgggcagattcaggccgttggattcacgctgtacatggaaatg
ctcgagcgcgcggtgaagtcgatccgcaagggcgaacagccgaacctcgaccagccgctc
ggcggtggcccggaagtcaacctgcgggtgccggcgctgattccggaagattacctgccg
gacgttcacgcacgcctgatcctgtacaaacgcatcgcttcggccaccgacgaggaaggt
ctgaaggatctgcaagtggaaatgatcgaccgctttggtctgctgccggagccgaccaaa
aatctggtgcgcatcacggcgcttaaattgcaggccgagcagctgggcatcaagaaagtc
gatggcggcccgcaaggtggccgtatcgagttcgcggcgcagacgccggtcgatccgatg
accctgatcaaactgatccagagccagcctaaacgctacaaattcgaaggcgccacgatg
ttcaagttccaggtgccgatggagcgcccggaagagcgctttaatactgtggaggcgttg
ttcgaacgcctcatcccgaaaactgcttga
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