Pseudomonas glycinae: AWU82_18340
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Entry
AWU82_18340 CDS
T06994
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pgy
Pseudomonas glycinae
Pathway
pgy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AWU82_18340 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgy03400
]
AWU82_18340 (ligD)
Enzymes [BR:
pgy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AWU82_18340 (ligD)
DNA repair and recombination proteins [BR:
pgy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AWU82_18340 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
AMQ85183
LinkDB
All DBs
Position
complement(2519829..2522375)
Genome browser
AA seq
848 aa
AA seq
DB search
MSRNLDDYNRMRDFSATSEPSADHRRGKKSAGDHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPQEDP
EKAYAKGKLKFELRGEKLAGVWNLVRTHMPGKKEQWFLIKHQDSAARPQSDYDVLVAEPD
SVLSERTIVDKPRLSAKQVKPLQGPAKAPRKSASGKLTGAHKAKIPAQLKPQLATLVESA
PEGDWQYEIKFDGYRIMARIDQDEVQLFTRNGHDWTHKLPKQAQALAALGLESAWLDGEM
VVADADGVPDFQALQNAFDSGRSENIVYYLFDLPYLNGVDLREVPVQERRAALATVLKAH
EDPLLRFSEAFDETPQALLNSACQMRMEGLIGKRLGSPYVSRRSSDWIKLKCKHRQEFVI
VGYTDPKGARSSFGALLLGLHDRDSGELRYAGKVGTGFNETTLKSILAQLKPLKVKKPAV
INPPSGFEAKGVHWLKPSLLAEVAFAEMTQDGSVRHAVFHGLREDKPAKDITEERARPMK
ISKTESTAPSQSGLADGKVRITHPDRVIDASSGTTKMQLAEYYASVAEWILPQLKDRPVA
LVRAPDGIAGELFFQKNAENLAIPGIRTLDKELTGQPVMLINNAEALIGAVQMSTVELHT
WNATTTDLDKPDRFVLDLDPDPALPWKSMVEATALTLTVLDELGLKAFLKTSGGKGIHLV
VPLTRKHGWDEVKDFSHAIVTHMAKLLPERFSAVSGPKNRVGRIFIDYLRNGLGATTICA
YAARTREGLPVSVPLFREEVGEIKGADQWNVRNVHERLAEVGDEPWADIKKIRQSITAEM
RKRVGMKK
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggaatctcgacgactacaaccggatgcgcgacttttcggcgacctcggaaccg
tcggctgaccaccgccggggtaagaaatccgccggcgaccacgccctgcagttctgcatt
caaaagcacgatgcctcgcacctgcattacgactttcgcctggaactcgacggcgcgctc
aagagctgggctgtgcccaagggcccgtcgctggaccccaaggtcaagcggctggcggtg
catgtcgaagaccatccgctggactacgcgacgttcgagggcagcattcccgaagggcat
tacggtgccggcgatgtgatcgtctgggatcgcggcgtgtggattccgcaggaagacccg
gagaaagcctacgccaagggcaagctcaaattcgaactgcgcggcgagaagcttgccggg
gtgtggaacctggtgcgcacccacatgccgggcaagaaagagcagtggtttctgatcaag
catcaggacagtgccgcacgcccgcaaagcgattacgacgtgctggtcgccgagcccgac
agtgtgctcagcgagcgcacgatcgtcgacaagccccggctcagtgcgaagcaggtcaaa
ccccttcaaggcccggcgaaagcaccgcgcaagtcggcctcgggcaagctcaccggggcg
cacaaggccaaaattcccgcgcagctgaagcctcagctcgccacgctggtagagagtgcg
ccggagggcgattggcaatacgaaatcaagttcgacggctatcggatcatggcgcgcatt
gatcaggacgaggtgcagttgttcacccgcaatggccatgactggacgcacaaattgccg
aaacaggcgcaagccctcgcggcgctgggcctggagtcggcgtggttggatggtgagatg
gtggtcgccgacgccgacggcgtgccggactttcaggccctgcaaaacgcgttcgattcg
ggacgcagcgaaaacatcgtctattacctgtttgatctgccgtatctgaacggtgtcgac
ctgcgcgaggtgccggtgcaggaacggcgcgcagcgctggccacggtgctgaaagcccac
gaagatccgcttttgcgcttttccgaagcgttcgacgaaaccccgcaggcgttgctcaac
agcgcctgccagatgcgcatggaaggcctgatcggtaaacgcctcggctcgccttacgtg
tcgcgccgcagcagcgactggatcaagctcaagtgcaagcatcgccaggaattcgtgatt
gtcggctacaccgatccgaaaggcgcgcgcagttcgttcggcgcgttgctgctgggtctg
catgatcgtgacagcggcgagttgcggtacgccggcaaggtcggcaccggattcaatgaa
accaccctcaagagcatcctcgcgcagctcaagccattgaaggtgaagaaaccggcggtg
atcaatccgcccagcggtttcgaggccaagggtgtgcactggctcaaaccgagtctgctg
gcggaagtggcgttcgccgaaatgacccaggacggctcggtgcgtcacgccgtgttccat
ggcttgcgcgaggacaaaccggccaaggacatcaccgaggagcgcgccagacccatgaag
atttcaaagactgaatctaccgcgccgtcgcaatccggcttggccgacggcaaggtgcgg
atcactcatcccgaccgggtgatcgatgccagcagtggcaccaccaagatgcagctggcc
gagtattacgccagcgtcgccgaatggattctgccgcagctcaaggaccgcccggtggcg
ctggtacgtgcgccggacggtatcgccggtgagctgttcttccagaagaacgctgagaac
ctggcgatccccggcatccgcacgctggacaaagaactgaccggccagccggtgatgctg
atcaacaacgccgaagccttgatcggcgcggtgcagatgagcacggtcgaattgcacacc
tggaacgctaccaccaccgatctggacaagcccgaccgctttgtcctcgacctcgacccg
gacccggcgctgccgtggaaaagcatggtcgaagccacagcgctgaccctgactgtgctg
gatgagctgggcctcaaggcgtttctcaagaccagcggcggcaagggcattcatctggtg
gtgccgttgacccgcaagcatggctgggacgaggtcaaggatttcagccacgccatcgtc
acgcacatggcgaaattgttgccggagcgtttttcagcggtgtccgggccgaaaaatcgt
gtcgggcggatcttcatcgattacctgcgcaacggcctgggcgccaccaccatttgcgcc
tacgcggcgcgtacccgtgaagggttgccggtgtcggtgccgctgtttcgggaagaagtc
ggcgagatcaagggcgccgatcaatggaacgtgcgcaatgttcacgaacggctggcggaa
gtaggcgatgaaccctgggcggacatcaagaaaatccgacagagcatcacggccgagatg
cgcaagcgggtgggcatgaaaaaatga
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