Pseudomonas glycinae: AWU82_29065
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Entry
AWU82_29065 CDS
T06994
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pgy
Pseudomonas glycinae
Pathway
pgy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWU82_29065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgy03019
]
AWU82_29065
Enzymes [BR:
pgy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AWU82_29065
Messenger RNA biogenesis [BR:
pgy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWU82_29065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
AUG97497
LinkDB
All DBs
Position
complement(3342678..3344156)
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AA seq
492 aa
AA seq
DB search
MTVLKALKKMFGKSEAEQLAPVPTAPSHAPGHRNDASQADRQTPATPPKQEPKPASAAAP
ATEPARSETPKPAKPRREPKPKAPVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIHDL
GFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRA
LIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLL
DFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVM
NLAKQWTTDPAIVEIEVTNVANENVEQHIYAVAGADKYKLLFNLVNDNGWERVIVFANRK
DEVRRIEERLVRDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGIS
HVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEEKLGRKISCETPPT
HLLRAVERKRPQ
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcactcaagaaaatgttcggtaaaagcgaggctgagcagctcgcg
ccagtccccactgcgccgtcgcacgcccccggtcatcgcaacgatgccagccaggccgac
cgccagacgcccgccacgcccccaaagcaagaaccgaaacccgcttcagctgccgcgccc
gccaccgagccggcccgcagcgaaacaccgaaaccggccaaaccacgtcgcgaacccaag
cccaaggcgccggtgattccctggaaactcgaagacttcgtcgtcgagccgcaggaaggc
aagacccgcttccacgatttcaaactcgccccggaactgatgcacgccatccacgacctg
ggtttcccgtattgcacaccgatccaggcccaggtgctgggttataccctcgccggcaaa
gacgccatcggccgcgcccagaccggcaccggcaagaccgccgcgttcctgatctcgatc
atcacccagctgttgcagaccccgccgccgaaagagcgctacatgggcgagccacgggcg
ctgatcatcgcgccgacccgcgagctggtggtgcagatcgccaaggacgccgccgacctg
accaagtacaccggtctcaacgtcatgaccttcgtcggcgggatggacttcgacaagcag
ctcaagcacctcgaagcgcgccattgcgacatcctcgtcgcgaccccgggccgcctgctc
gacttcaaccagcgcggcgacgtgcacctggacatggtcgaagtgatggtgctggacgaa
gccgaccgcatgctcgacatgggcttcatcccgcaggtccggcagatcattcgccagacc
ccgccgaaaagcgaacgccagactctgctgttctccgcgaccttcaccgatgacgtgatg
aacctcgccaagcagtggaccaccgatcctgcgatcgtcgaaatcgaagtcaccaacgtg
gccaacgaaaacgtcgagcagcacatctacgcggtggccggtgccgacaaatacaaactg
ctgttcaacctggtcaacgataacggctgggagcgggtcatcgtgttcgccaatcgcaag
gacgaagtgcgccgcatcgaagaacgcctggtacgcgacggcatcaacgccgcgcaactg
tccggcgacgtgccgcagcacaagcggatcaagacgctggaaggcttccgcgaaggcaag
atccgggtgctggtcgccaccgacgtggccggtcgcggtatccacatcgacggcatcagc
cacgtgatcaacttcactctgccggaagtcccggacgactacgtgcaccgcatcggccgt
accggtcgggccggcgccgatggcgtgtcgatcagcttcgccggtgaagacgactcctat
cagttgccgtccatcgaagaaaaactcggtcgcaagatcagctgtgaaacgccgccgacc
catctattgcgggcggttgagcgcaagcgtccacagtaa
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