Panicum hallii (Hall's panicgrass): 112877322
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Entry
112877322 CDS
T07366
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03013
Nucleocytoplasmic transport
phai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112877322
03015 mRNA surveillance pathway
112877322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112877322
Enzymes [BR:
phai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112877322
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112877322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
112877322
NCBI-ProteinID:
XP_025797393
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All DBs
Position
9:complement(70922471..70926766)
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AA seq
500 aa
AA seq
DB search
MADKASPEKKSWADVEEEEEAKAKAEAAAAAAAAAASSSSTSEPAVEAQAKQIESLSLAP
PEDDAAGEEGPPLLDDSDDAQIQAVTSGGTVYESATTFEDLKLSPELLKGLHDEMGFSRP
SKIQAITLPMILTPPYKDLVAQAHNGSGKTTCFVLGMLSRVDPNRRIPQAICICPTRELA
QQNKAVLMRMGKFTGITCACAIPPAQKDYVPVSKMPPINDQIVIGTSGTLIKWITNKKVA
TREIKILVFDEADHMLAEDGFRSDSERIMRDIQRSAGGCQVLLFSATFNERVKDFVTKVI
KDGNQIFVKKEELTLEKVKQYKVQVPDEAAKIEVIRDKIFEFGQKVGQVIIFVRTKQSTK
NVHNALTREDYVCSSIQGSLDQGEREKIIQEFKDGYTKVLISTDVLARGFDQAQVNLVIN
YDMPIKFGTRDEPDYEVYLHRIGRAGRFGRKGAVFNFLCGETDNVVMKKIENYFQHQVPE
VRNWKNEENFETALKDAGLL
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaaggcctctccggagaagaagtcgtgggccgacgtcgaggaggaggaggag
gccaaggccaaggcggaggcggcggcggcggcggcggcggcggcggcctcgtcctcctcg
acctccgagccggcggtggaggcgcaggccaagcagatcgagtcgctctccctcgccccg
cctgaggatgacgccgccggcgaggaaggcccgcctctcctcgatgactccgacgacgcg
caaatccaagccgtgacttcgggcggcacggtgtacgagtcggccaccacgttcgaggat
ctgaagctgtcgccggagctgctcaaagggctgcacgacgagatgggcttcagccgcccg
agcaagatccaggcgatcaccctccccatgatcctcacgccgccctacaaggacctcgtc
gcgcaggcgcacaacggctccggcaagaccacctgctttgtcctcggcatgctcagccga
gtcgatcccaatcgcaggatcccccaggccatctgcatttgcccgactagggagctcgcg
cagcagaataaggcagttctgatgaggatgggcaagtttactggcattacatgtgcctgt
gcaatcccaccagctcaaaaggattatgtgccggtctctaaaatgccgccaattaatgac
cagattgtgattggcacatctgggacactcatcaagtggattaccaataagaaggtggcc
acaagggagatcaagatacttgtgtttgatgaggcggatcatatgcttgctgaggatggc
tttaggagtgattctgaaaggataatgagggatatacaaagaagtgctggtggttgtcag
gtgcttctcttttctgcaaccttcaatgagagggtgaaagattttgtaacaaaggtcatt
aaggatggaaatcaaatattcgtgaagaaggaagagcttactttggaaaaagtaaagcaa
tacaaagttcaagtccctgacgaggcggccaaaatagaggtcataagggacaagatcttt
gagtttggacaaaaagttggccaggttatcatctttgttagaacaaagcaaagtactaag
aatgttcacaatgctttgacgagagaggactacgtgtgctcctcaattcaaggatccctt
gaccaaggagagagggaaaagattatacaggaattcaaggatgggtacaccaaggttctt
atctcaactgatgttcttgctcgtggttttgaccaagcacaggttaacctggtcatcaac
tatgacatgccaatcaaatttggtacaagagatgaacctgattatgaggtgtacttgcac
agaattggcagagctgggcgctttggccgaaaaggtgctgtgttcaacttcctgtgtggt
gaaacagataatgttgtgatgaaaaagattgagaactacttccagcaccaagtacctgag
gtgcgaaattggaaaaacgaggaaaattttgagactgctctcaaggatgcaggtttacta
tga
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