Panicum hallii (Hall's panicgrass): 112891731
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Entry
112891731 CDS
T07366
Name
(RefSeq) putative pectate lyase 21
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai00040
Pentose and glucuronate interconversions
phai01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
112891731
Enzymes [BR:
phai01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
112891731
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
112891731
NCBI-ProteinID:
XP_025814456
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Position
5:complement(6073286..6074656)
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AA seq
346 aa
AA seq
DB search
MEDARSLLPYATVDSSLRALAGQAEGFGRHAIGGLHGDVYHVTTLEDDGPGSLREGCRRP
EPLWIVFDVSGSIRLSSGVRVSSYKTVDGRGRRVRLAGRGLELRECEHVIVCGLEIAGGR
GHDADALQIKPRSRHVWVDRCTLRDFADGLVDVTNGSTDVTVSRCHLAAHDKAVLVGGSS
AHVEDRGIRVTIHHCFFDGTRQRHPRVRFGRVHLYNNYTRGWGIYAVCASVESQIISQCN
IYEAGEKKNVFRYMEEQALDKDQISSGRIRSEGDLFLNDAQQCAADAAGDELWDFEVQDF
YQSCSVQPTSMALKVLLQCCTGWQPIPLPPDVSSTEGAADLADPTA
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgcgaggtcccttctcccgtacgccaccgtggactcctcgctgcgcgccctg
gccgggcaggccgagggcttcggccggcacgccatcggcggcctccacggcgacgtctac
cacgtcaccaccctcgaagacgacgggccgggctcgctccgggagggatgccggaggccc
gagccgctgtggatcgtcttcgacgtgtccggcagcatccgcctctcctcgggcgtgcgc
gtgtcgtcctacaagaccgtcgacgggcgcgggcggcgcgtgaggctcgccggccggggc
ctggagctccgggagtgcgagcacgtgatcgtgtgcgggctggagatcgcgggcggccgc
gggcacgacgccgacgcgctgcagatcaagccccggtcccggcacgtctgggtcgaccgc
tgcaccctgcgcgacttcgccgacggcctcgtcgacgtcaccaacggcagcacggacgtg
acagtctcgcggtgccacctcgcggcgcacgacaaggccgtgctcgtcgggggcagcagc
gcccacgtcgaggaccgcggcatccgggtcaccatccaccactgcttcttcgacggcacg
cggcagaggcacccgcgcgtcaggttcggcagggtgcacctctacaacaactacaccagg
ggatggggcatctacgctgtctgcgccagcgtcgaatcacagattatctcccagtgcaac
atttacgaggcgggggagaagaagaatgtcttcaggtacatggaagaacaggcattagac
aaagatcaaatctcgagcgggcgcatccggtccgaaggcgacctgttcctgaatgatgca
cagcagtgcgccgccgatgctgcaggagatgagctgtgggacttcgaggtccaggacttc
taccagtcgtgttcggttcagcccacgtcaatggcgctcaaggtgctcctgcagtgctgc
accggctggcagccgattccgttgccaccagatgtctcctccacagaaggtgctgctgac
cttgctgatcctacggcctga
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