KEGG   Panicum hallii (Hall's panicgrass): 112899583
Entry
112899583         CDS       T07366                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
phai  Panicum hallii (Hall's panicgrass)
Pathway
phai03082  ATP-dependent chromatin remodeling
phai03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:phai00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112899583
   03083 Polycomb repressive complex
    112899583
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:phai03036]
    112899583
Enzymes [BR:phai01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     112899583
Chromosome and associated proteins [BR:phai03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     112899583
   HDAC complexes
    Sin3A-HDAC complex
     112899583
    BRAF-HDAC complex
     112899583
    REST complex
     112899583
    SHIP complex
     112899583
    MiDAC complex
     112899583
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     112899583
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    112899583
  Chromatin remodeling factors
   NuRD complex
    112899583
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 112899583
NCBI-ProteinID: XP_025823891
LinkDB
Position
7:34084420..34089875
AA seq 430 aa
MLEKDRISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLSYGLHKKMEIYRPHKAYPIEL
AQFHSADYVEFLHRITPDTQHLYASELTRFNLGEDCPVFDNLFEFCQIYAGGTLDAARRL
NHKSCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDLFFPGTGDIKDIGEREGKYYAINIPLKDGIDDASFTRLFKT
IIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAECVKFVKKFNIPLLVTGGGGY
TKENVARCWAVETGVLLDTELPNEIPNNDYIEYFAPDYTLKVANLNMDNLNSKTYLSSIK
VQVMESLRSIQHAPGVQMQEVPPDFYIPDFDEDELDPDERVDQHTQDKQIHRDDEYYEGD
NDNDHDNGTR
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgctggagaaagaccggatatcctacttctacgacggagatgtgggcaatgtctacttt
gggccaaatcaccccatgaagccacatcgtctttgtatgacgcatcaccttgttctttca
tatggacttcataaaaagatggagatatatagaccacacaaagcatatccaatagagctt
gcccagttccattctgctgattatgtggaattcttgcaccggataactcctgacactcaa
cacctgtatgcaagtgaattaactagattcaatcttggagaagactgcccagtctttgat
aatttgtttgagttctgccaaatctatgctggaggaactttagatgctgctcgcagatta
aatcataaatcatgtgacattgccattaattgggccggtgggctgcatcatgcaaaaaag
tgtgaggcatcaggcttctgctacattaacgatctagttttgggaattctggagcttctc
aagtaccatgccagggttctatatattgacattgatgtccatcatggagatggagttgaa
gaagctttttatttcacagacagggtaatgactgtgagtttccataagtatggtgacctg
ttctttcctggcacgggtgatattaaggatataggagaaagggaaggaaaatattatgcc
atcaacattccacttaaagatgggatagatgatgccagctttactcgtctttttaaaacg
attattgccaaggttgttgagacatatctgcctggtgctattgttcttcaatgtggggct
gattcattggcaagggaccggctgggctgcttcaatctctccattgaaggccatgctgaa
tgtgtaaagtttgttaagaaattcaatattccccttctggtaacaggaggtggtggatac
accaaggagaacgtagcacggtgttgggctgttgaaactggggtccttttagacacagaa
ctcccaaatgagatcccaaacaatgactacattgagtactttgctccagattatacactg
aaagttgcaaatttgaacatggacaatttgaatagtaagacctatctcagttcaatcaaa
gtgcaagtcatggagagtttgcggtccatacagcacgctcctggtgttcagatgcaagag
gttccacctgatttttatatccctgattttgatgaagatgagctggatcctgatgaacgt
gttgatcagcatacccaagacaagcagattcaccgtgatgatgagtactacgaaggcgac
aacgacaacgatcatgacaatggcactcgctga

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