Panicum hallii (Hall's panicgrass): 112899623
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Entry
112899623 CDS
T07366
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03013
Nucleocytoplasmic transport
phai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112899623
03015 mRNA surveillance pathway
112899623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112899623
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112899623
mRNA cycle factors
P-body specific factors
112899623
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
112899623
NCBI-ProteinID:
XP_025823947
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All DBs
Position
7:complement(35626095..35632734)
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AA seq
501 aa
AA seq
DB search
MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWACFRPGNASQKNHRYSRLYLNF
KRPEDVVEFAEAFNGHVFVNEKGAQFKALVEYAPSQQVPKSNIKKDGREGTIMKDPEYLE
FLELISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTALMMFVRQQRAAKSMAQRPGSRV
SRKVSGVVTSSSSTSKRSSEKRRSSAYVVRDSAKEKPTYIMVPKREEHTQREKAIAGSSD
VTSGGTSGPGQAVEAKRDKIVILKGRGRVDSNIPDAATQQSSTPVKNVPPLSSRQDQRLE
ASGRIIKTILSNKETRSSNTSQHEQEGHMLNTERDKRPPRVLNPRTIVKDQIVENAERSH
FDEKANHLHGSAPVGEKIERHARNRDRPDRGVWAPRRYDKSTSGGGSHASSSEFPQMQSH
PGDSFSQLADGHGDRKTDTRSHGGGRGGPVENGHRRRGPPRGPKETEISANMPDGKNSKR
SSASYGAHERQVWVQKSSSGS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccggcgcaccgcaccaaggtggtgctccggcggctgccgccggcgatcgcg
cagcaggccgtcgtggaccaggtcgacgcgcgcttcgccgggcggtacgactgggcgtgc
ttccgccccggcaatgccagccaaaagaatcataggtattctcgactctaccttaatttc
aagcgcccagaggatgttgttgagtttgctgaggccttcaatggacatgtatttgtgaat
gaaaagggtgctcaatttaaagctcttgtggaatatgcaccatcgcaacaggttcccaag
tcaaatatcaagaaggatggccgtgaaggaactattatgaaagatccggaatacttagag
tttcttgagcttatttcaaagcctactgagcatctgccaagtgctgaaattcagcttgaa
aggaaagaagctgaaagggcagctgctggaaaggaggcacctgttgtgacagctcttatg
atgtttgttcgtcagcaacgggcagctaagagtatggctcagagacctggaagtagagtt
agcagaaaagtttcaggtgttgtaactagcagttctagtacttctaaaaggtcttctgag
aagcgcaggtcctctgcgtatgttgtacgtgacagtgctaaggagaaaccaacttatatc
atggtgccgaagagagaagagcatacacagagggaaaaagctattgctggaagttcagat
gtaacaagtgggggaacatctggacctggtcaggctgttgaggctaaaagggacaaaatt
gtcattttgaaaggcagaggaagggttgattctaatatacctgatgcggcaacccagcag
tcatcaacccctgtgaagaatgtgccaccattgagttctagacaagaccagcgactcgag
gccagtggtagaattattaagactatactttcaaacaaggaaacccgcagttcaaataca
tctcaacatgaacaggaaggtcacatgcttaacactgagagggataagaggccaccaagg
gttctcaacccacgtaccatagtgaaagatcagatagttgaaaatgctgagagaagccat
tttgatgagaaggctaatcatcttcatggctctgctccagttggtgagaagattgaaagg
catgctagaaacagagataggcccgatcgtggtgtttgggctcctcgccgctatgacaag
tctacatctggaggtggttcacatgcctcatcatcagaattccctcaaatgcagtcacat
cctggagatagtttctcgcaactagcagatggtcatggagacagaaagacagacacaagg
agtcatggtggtggccgtggtggtcctgttgaaaatgggcataggcgtcgtggtcctcca
cgtggtccaaaggaaaccgaaatatctgctaacatgcctgatggaaagaattcaaagagg
agttctgctagctatggtgctcatgagagacaagtatgggttcagaagtcaagttcaggc
tcgtga
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