Panicum hallii (Hall's panicgrass): 112899828
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Entry
112899828 CDS
T07366
Name
(RefSeq) putative DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112899828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phai03400
]
112899828
Enzymes [BR:
phai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112899828
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
112899828
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
mRNA_cap_enzyme
Ribonuclease_3
Motif
Other DBs
NCBI-GeneID:
112899828
NCBI-ProteinID:
XP_025824227
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All DBs
Position
7:complement(43710917..43720112)
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AA seq
1220 aa
AA seq
DB search
MAAKVRFGLLVAMFQAMSGDKRSAKKRARLRAFLDRAYVPSGGRDDYFSALRLVLPGLDR
ERGTYGLKETALAAVLVDALGIAKDSPDAVRLINWRRGGGGRNAGNFALVAAEVLQRRQG
ITSGGLTIKEVNDALDRLAATENRSEKATILSSLIKKTNALEMKWLLMIILKDLKLGISE
KSIFDEFHPDAQDLFNVTCDLKFVCEKLNDRSQRHKRQDIEVGKAVRPQLAMRVRDASAA
WKKLHGKQVVAECKFDGDRIQIHKKGEEIHFFSRSFLDHSEYAPGMSKIIKENILVDRCI
LDGEMLVWDTVLNRFAEFGSNQEIAKAAREGLETDRQLCYVAFDILYAGDTSVIHQSLTE
RQEILQKVVKPLKGHLEILIPTGGLNVRRPSDEPCWSIIAHNLEDVEKFFKDTIDNRDEG
IILKDLASKWEPGDRNGKWLKLKPDYIHAGADLDVIIIGGYYGSGRRGGEVAQFLVGLAV
PSDDNSYPKRFLSFCRVGTGLSDEERDALVTKLKPYFRKNEYPKKPPKFYEVTNNSKERP
DVWIESPDKSVIISVTSDIRTIKSEVFAAPYCLRFPRIQRVRYDKPWHECLDVQAFVDIV
HSSNGTTQKAADDNSLENDNTKRSRTNKKGEKKKSASIIPSHLMKTDVSGLKGETLIFAN
MIFYFVNIPSSYNLEYFHKLVVENGGSFSMNLNDSVTHCIAAEKKGIKYQAAIRQGRIIH
YDWILDCCKEKRPLHLQPKYILFLSDFARHKFPEEIDSYADYYYWDIDIADLKQIFSNID
KVADDSNMVSQYRKKHCIDERFCFFLGCCVYFHNTPLVNEDYNVISGIALERMKQDLTMH
GGQVCNSIASATHLVLVSVLHTYNFDILYKSFPPAERRYLHDKRLHVVSNKWLEDSVEKQ
MKLSETAYNLKPDTLEELEIVRSEENVRPLGHKFEEHKEVERANVKYAPRKRSRAASSSR
AAKAAPRPVRRTRARRGNQQAKIDDDVESEESVPDECQGDQNMDTDYISNEIGKGISNKD
QRLSRAASRPVPRTRARRGNQHAKIDDGESEESGPCETGKEDQKLNVDYISKTEADNSEK
DQGPPPGAQFLTLGEQEPEGVKSKAMEEKPSSPFQRTSAGEVTSSVPCEKIEQMVDPLHA
MLLDMIPTLSTTSPEDANRVPPTKIEKEPPEVGSYTSKSSDIPVPDAGTSGVPAPDPNAA
PPKKKKVSYKDVASELLKDW
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaaggtgcggttcggcctcctggtggcgatgttccaggccatgtcgggcgac
aagaggtcggcgaagaagcgcgcccgcctccgcgctttcctcgaccgcgcctacgtcccc
agcggcggtagggatgactacttcagcgcgctgcgcctcgtcctcccggggctcgaccgc
gagcgcggcacctacgggctcaaggaaaccgccctcgccgccgtgcttgtcgacgccctg
ggcatcgccaaggactcccccgacgccgtccggctcatcaactggcgccgcggcgggggt
ggccgtaacgctggcaacttcgcgcttgtcgcagctgaggtcttgcagcggaggcaaggt
ataacgtctggtggattgacaataaaggaggtcaatgatgcacttgatcgtttagctgca
actgagaacaggtctgagaaggccacaattctttctagtctgatcaagaaaaccaatgcc
cttgaaatgaagtggcttctgatgattattcttaaagatttgaagttggggataagtgag
aagagcatatttgatgaatttcatcctgatgcccaagacttattcaatgtcacttgtgac
ttgaaattcgtctgtgagaagctcaatgatcgaagccaaaggcataaacgccaggatata
gaagttgggaaggctgtcaggcctcaactagctatgcgagtccgtgatgcttcggctgct
tggaagaagcttcatggaaaacaagtggttgctgagtgcaaattcgatggtgaccgtatt
caaattcacaaaaaaggggaagagattcatttcttctcaaggagctttcttgatcactct
gaatacgcacctgggatgtcaaagattattaaggaaaatatcctggttgacaggtgtata
ttggatggagaaatgcttgtctgggacactgtgcttaaccgttttgctgaatttggttca
aaccaggaaatagctaaggccgcaagggaggggctggagactgatcggcagttgtgctat
gttgctttcgacatcctttatgctggagataccagtgttatccaccaaagcttgacagag
cggcaagaaattctacagaaggttgtgaaacctttaaagggtcatctcgagattttgatc
ccaacgggtggtctaaatgtccgtcgcccttcagatgaaccgtgctggtccattattgca
cataatcttgaagatgttgagaaattcttcaaagatactatcgataacagagacgagggc
attatactgaaggaccttgcttccaaatgggagcctggtgatcgaaatggaaagtggctt
aaactaaagcctgattatatacatgctggtgctgatcttgatgttattattataggagga
tactatggatctggacgtcgaggaggagaggttgcacagtttttagttggccttgcagtg
ccttcagatgataacagttatcccaaaagatttctttccttttgccgggttggtactggc
ctctctgatgaagagcgtgatgctcttgtcaccaaactgaagccttatttcaggaaaaat
gagtaccccaaaaaaccacccaaattttatgaagttacaaataactcaaaggagaggcca
gatgtttggatagagagccctgataagtcagtcataatatctgtaacgagtgacattcgt
acaatcaagtccgaggtatttgctgctccatactgtttgagattcccccgtattcagaga
gtgagatatgataagccatggcatgagtgccttgatgttcaggcatttgtggacattgtg
cattcaagtaatggaacaacacaaaaggcggcagatgataatagcctggagaatgataac
acaaaacgttcaagaacaaacaaaaaaggggagaagaagaagagtgcctcaatcatccct
tcacatttaatgaagactgatgtatcaggtctcaagggagaaacgctgatatttgcaaac
atgattttctattttgtcaacatcccatcatcatataatctcgaatattttcataaacta
gttgtggaaaatgggggatctttctccatgaatttgaatgactctgttactcactgcata
gctgcggagaagaaaggtatcaagtatcaagcagccatacgtcagggaaggatcattcac
tatgactggatattggactgttgcaaggaaaaacgtcctcttcatttgcaacctaagtat
atactttttctttctgattttgccaggcacaaatttcctgaagagattgattcatatgct
gactattactactgggacattgatattgctgacctcaagcagattttcagtaacatcgac
aaagttgctgatgattcgaatatggtcagtcagtacagaaagaagcattgcatagacgag
agattctgcttcttcctgggttgctgtgtctacttccataatacacccttagtgaatgag
gactacaatgtaatatccggtattgccctggagaggatgaagcaggatctaacaatgcat
ggtggtcaagtctgcaacagcattgcttcagcaactcatttggttctagtttcagtttta
catacatacaactttgacatcctgtacaagagcttccctcctgctgaaagacgttatcta
catgacaaaagattgcatgttgtcagtaataagtggttggaagattcagtggagaaacaa
atgaagctgtctgaaactgcttacaatcttaaaccagatacactggaagagctagaaatt
gtaaggagtgaggaaaatgttcgccctctgggtcataagtttgaggaacacaaggaggtt
gaaagagcaaatgtcaaatatgccccaaggaaaaggagcagggcagccagtagttcaagg
gctgcaaaagctgctcctagaccagtccggcgaacaagggcaagaagaggaaaccagcaa
gcaaaaatagacgatgatgttgaatctgaagaaagtgtccctgatgaatgtcaaggtgat
caaaatatggacacggactacatctctaatgagattgggaaaggtatcagcaacaaagac
caacgactgtcccgagctgcttccagaccagtcccgagaacaagggctaggagaggaaat
cagcatgcaaagatagatgatggagaatctgaagaaagtgggccttgtgaaacaggtaaa
gaagatcaaaagttgaatgtggattacatctccaagacggaagcagataacagcgagaaa
gaccagggaccacctccaggtgcccagtttctcacattaggggagcaagagcctgaaggt
gtcaaatcgaaagccatggaggagaaaccaagcagtcctttccaaagaacaagtgctggt
gaagtgacgagtagtgtaccgtgtgagaagatagaacaaatggtagatccgttgcacgca
atgcttctggatatgataccaaccctgagcacgacaagtccagaagatgcaaacagggtg
cccccgacgaaaattgagaaggagccgcctgaggtaggaagttacacatccaaaagttct
gatattccggtgccagatgcaggaacatccggggttccagcgccagacccgaatgcagct
cctccaaagaagaaaaaggtcagttacaaagatgtcgctagtgagcttctgaaagattgg
tga
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