Panicum hallii (Hall's panicgrass): 112901324
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Entry
112901324 CDS
T07366
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03022
Basal transcription factors
phai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112901324
09124 Replication and repair
03420 Nucleotide excision repair
112901324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112901324
03400 DNA repair and recombination proteins [BR:
phai03400
]
112901324
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112901324
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112901324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
112901324
NCBI-ProteinID:
XP_025825997
LinkDB
All DBs
Position
7:complement(39212545..39216809)
Genome browser
AA seq
431 aa
AA seq
DB search
MYGVGGGGGGFNAPSTTSGRRRNPGDEEEDEEEEGGEGRVLEAWERAYADDRSWEALQED
ESGLLRPIDTKTLVHAQYRRRLLLRSAAAATARIQKGLIRYLYIVIDLSRAASEMDYRPS
RMAVVAKHAEAFIREFFDQNPLSHVGLVTIKDGISHRLTDIGGSPESQIKALMGKLECSG
DSSLQNALELVHGYLDQVPSYGHKEVLILYSALNTCDPGDIMETIEKCKKSKIRCSVIGL
AAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAAANLIKMGFPQRGPE
DLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGLTLVSSPHLARSYHHLFPVAP
FDEVSSVPNRIQRGVQNCFGCQQNLFNPDGQISLHVRCPKCNQHFCLDCDIYIHESLHNC
PGCESQCGFSS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcgtcggcggcggcgggggcggcttcaacgcgccgtccaccacctccggccgg
cgccgcaacccgggcgacgaggaggaggacgaggaggaggagggcggcgagggccgcgtc
ctggaggcgtgggagcgcgcgtacgcggacgaccgctcgtgggaggcgctgcaggaggac
gagtcgggcctcctccgccccatcgacaccaagaccctcgtccacgcgcagtaccgccgc
cgcctcctgctccggtctgccgccgccgccacggcccgcatccagaaggggctcatccgc
tacctctacatcgtcatcgacctctcccgggcagcttcagagatggattatcgtcccagt
cgaatggctgttgttgcaaaacatgctgaggcttttataagagaattcttcgaccagaat
cccttgagccatgttggcctagtgacaattaaagatggtatttctcatcggctgacagac
attggagggagcccagaatcacagattaaggctctgatggggaaacttgagtgttccggt
gattcgtctctgcagaatgctctagaacttgtccatggttatttagatcaagtaccatca
tatggtcacaaggaagtcttaattttgtactctgccctaaatacatgtgatcctggtgat
atcatggagaccatagaaaaatgtaagaaatccaaaattagatgctcagttattggcctt
gctgcagagatcttcatttgcaaacatctctgtgaagagactggtggatcctacacggtt
gcactagacgagtctcatttcaaagaattgttgctggaacatgcacctccacctcctgca
atagcagaatatgctgcagctaatttgattaagatgggttttccacagaggggtcctgag
gatcttatctctatctgctcttgtcacaagaaaataaagtctggggctgaaggttacata
tgtcctagatgcaaagttaatgtgtgtgagcttccaacagaatgtcgaacttgtggccta
acactagttagttctccacacttggcaaggtcatatcatcatctcttcccggtagcaccg
tttgatgaggtttcctctgtcccaaatagaatccaaaggggagtacaaaactgtttcggc
tgtcagcagaacctttttaaccctgatggccaaattagcctccatgttcgctgcccaaaa
tgcaaccaacacttctgcctggattgtgatatttacatccatgagagcttgcacaattgc
cctggttgtgagagtcaatgtggtttctcatcatag
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