Peptoniphilus harei: NCTC13077_00237
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Entry
NCTC13077_00237 CDS
T05838
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
phar
Peptoniphilus harei
Pathway
phar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NCTC13077_00237 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phar03400
]
NCTC13077_00237 (recD)
Enzymes [BR:
phar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NCTC13077_00237 (recD)
DNA repair and recombination proteins [BR:
phar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC13077_00237 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_4
UvrD_C_2
SH3_13
Viral_helicase1
AAA_11
HHH_5
HHH_2
T2SSE
Herpes_Helicase
PIF1
UvrD-helicase
HHH
AAA_22
AAA_28
nSTAND3
HHH_3
SLFN-g3_helicase
RNA_pol_A_CTD
Helicase_RecD
UvrD_C
AAA_14
NTPase_1
AAA_24
AAA_18
Rad17
ABC_ATPase
ABC_tran
AAA
AAA_16
Motif
Other DBs
NCBI-ProteinID:
VEJ33481
LinkDB
All DBs
Position
1:256781..258958
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AA seq
725 aa
AA seq
DB search
MISLEGLVEKIIFRNEENGYTVAKINSSDGDLVVVGSATIFKENLKYKFTGDFTYHNKYG
EQFAFTDLEEVMPEGEAAIVSYLSSAMIPHVGEKMAERIVDEFKEETLDVIENHPEKLLS
IKGIGRKKYRDIKEALDKQYAMRKIFLHFSKYNLPASVILKIYKEYGDESIDLVMKNPYD
LIGRVRGLGFKKADEIAESIGIEKDSDFRRLAGLKYALMLANRDGHTYLPIDKLIKAGER
ILGTKFEDLDEVARTLTLEKNFFVERDGENYNCYIARYLAAENYVAGKLNDLNISFDEKF
DIDKKIRRTEKFRKIELSKTQRRAVKDAINKGVFVITGGPGTGKTTTLKVLIDIFESMDK
DIKLAAPTGRAAKRMKEQTGRDAFTIHKLLEIGFGGDFANVEELECDVLILDEVSMVDIL
LMETLLKSIESPTRLILVGDKDQLPSVGAGNVLADILESGVIESVNLEEIFRQSEESMIV
KNAHLINKGDMPVLNLGDFFMISERGEAKGLEIIKDLVKTRLPNYFNVSQADVQVLTPTK
KGVQGTENLNLALQDHLNDSQDFIEVLGKKFKLGDRVLQTKNNYELESKVENEFYEDKQK
GVFNGDLGYISKIDKENKKATVVFDDVRSVEYNSDNLDELALAYAMTIHKSQGSEFPVVV
IPIYRAAPMLLTRNLIYTAITRASKAVVLVGISDYLVKMIENNKTRKRYSNLAKKLRDQD
EIKRG
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
ttgattagtcttgaaggtcttgtggaaaaaataatttttagaaatgaagagaacggctac
actgttgcaaaaataaattcaagtgacggcgaccttgtagttgttggatcagccacaatt
ttcaaagaaaacttaaaatacaaatttactggagacttcacctaccacaacaagtatggg
gaacagtttgccttcacagaccttgaagaagtcatgcccgaaggtgaagctgccattgta
tcttatctttcttctgcaatgattccccatgttggagagaaaatggctgagaggattgta
gatgagtttaaggaagagactcttgatgtaattgaaaatcatcctgaaaagctcctttct
attaaggggattggtcgaaaaaaatacagggacatcaaggaagccctcgacaagcaatat
gccatgaggaagatcttcctccacttctccaagtacaatcttcctgcctcagtgatttta
aaaatttacaaagaatatggggacgagtccatagatcttgtaatgaaaaatccctacgac
ctaattggaagggtgaggggacttggttttaaaaaggcagatgaaattgcagagtccatt
ggtattgaaaaagattctgactttagaaggctggcaggactgaagtatgcccttatgctt
gccaacagggacggccacacttatcttcctatagacaagttaataaaggctggagagaga
atacttggaacaaagtttgaagacctcgatgaagtagccaggactcttacacttgagaaa
aacttttttgttgaaagagatggagaaaattacaattgctacatagccagatacttggcg
gcagaaaattatgttgcgggaaagttaaatgatttaaatatttcctttgatgaaaagttt
gatatagataaaaaaatcaggaggacagaaaagtttaggaagattgaactttctaaaact
cagagaagggctgtcaaggatgccattaacaagggagtctttgtcataactgggggaccg
ggaactggtaagacaacaaccctaaaggttttaatagatatttttgaatccatggataag
gatattaagcttgctgctccaactggaagggctgccaagaggatgaaagagcagacggga
agagatgccttcactatccacaagctacttgaaattggttttggtggcgactttgccaat
gtggaggaacttgaatgtgatgtcttgatccttgatgaagtttccatggttgatattctt
ttgatggaaaccctcttaaagtccattgaaagtccaactcgtttgatcttagttggggac
aaggaccaacttccatctgttggggcaggcaatgtcttggcagatattttggagtctggt
gtcattgagtcagttaaccttgaagaaatctttaggcagtcagaagaatctatgattgta
aaaaatgcccacttaataaacaagggggacatgccagttttaaatctcggtgactttttt
atgatttctgaaagaggagaagccaagggtcttgaaatcatcaaagaccttgttaagact
aggctgccaaattattttaatgtcagccaggcagatgtccaagtcctaacgccaactaag
aagggggtccaggggacagaaaatttaaatcttgccctccaagaccacctaaatgacagc
caagactttatagaagtccttgggaagaaatttaaattgggcgacagggtcttacagaca
aaaaataattatgaattggaatctaaggttgaaaatgaattttatgaagacaagcaaaag
ggagtcttcaatggcgaccttggttatatttcaaaaattgacaaggaaaacaagaaggcc
acagttgtctttgacgacgtgagaagtgttgagtataattctgataatcttgacgagctt
gcccttgcctatgccatgaccatccacaagtctcaaggaagtgagtttcccgtagttgtc
atcccaatttatagggctgctcccatgcttttgacgagaaatttgatttacacagccata
actagggcgtcaaaagccgttgtccttgtggggataagtgattatcttgtgaagatgatt
gaaaacaataagacccgcaagagatattccaatcttgcaaagaagttgagggaccaagat
gaaattaaaagaggatag
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