Pedobacter heparinus: Phep_0022
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Entry
Phep_0022 CDS
T00978
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phe
Pedobacter heparinus
Pathway
phe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Phep_0022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phe03400
]
Phep_0022
Enzymes [BR:
phe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Phep_0022
DNA repair and recombination proteins [BR:
phe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Phep_0022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACU02248
UniProt:
C6XXJ4
LinkDB
All DBs
Position
complement(24424..27765)
Genome browser
AA seq
1113 aa
AA seq
DB search
MNIRDLISRYKTDERIVALAKALNAGKGTKLQLKGLVGSADATIAVAIYFLLHKPQLFVL
PDREEAAYFLADLESILDKEVLLFPSSFRKAFDFTQVDTANVLARAEVLNELNHQSEYGK
IVVSYPEALAEKVIDRTVLEKNTLEISLNAKLGIDFINEFLIDYDFNRTDFVYEPGQFSI
RGGIVDIFSFSHDLPYRIEFFGDIVESIRTFEIESQLSVEDVKTLTIIPNVQSKYLTETN
ISILDYIEKDTQVWFKDVEFTLDIVKSGYKKAVELWKALPAKEKQENQDWIDPKFAFTDE
KMMGDMFHDFPLVEFGKQFFYKTDQVFQFEIKPQPSFNKDFSLLIHNLKENEKQGLHNFI
FSASVKQTERLYAILDDIDKSVKFTPVNIPLREGFVDGGQKVAFYTDHQIFDRFYKYKLK
RGYQRSQAITLKELRDLKPGDFVTHIDHGIGKYAGLEKVEVNGKTQEMIRLVYADNDLLY
VNINSLNRIAKYSGKDGTAPKMNKLGTEAWDKLKKTTKKKVKDIARDLIKLYALRKSQVG
TAFAPDGYLETELEASFIYEDTPDQEKATSDVKKDMEAPHPMDRLVCGDVGFGKTEIAIR
AAFKAVANGKQAAVLVPTTILALQHFKTFTGRLKDFPCTVDYINRFKTSKQIKETLAKVA
EGKVDIIIGTHRLLSKDVKFKDLGIMIIDEEQKFGVSSKEKLRALRVNVDTLTLTATPIP
RTLHFSLMGARDLSIMSTPPPNRQAVNTELHVFNDKLIQEAVQFELDRGGQVFFIHNRVH
DLPQLGGLIQTLVPKARIGIAHGQLDGDQLEDVMLDFINGEKDVLVATTIIEAGLDIPNA
NTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTSEARKRLSAIEEFSDLG
SGFNIAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAIQELKTDEFKDLFKDEPL
RPFVNFTQVDTDLELYIPDDYVTNITERYNLYTELSKIEDENQLKAFELSLKDRFGPVPH
PVKTMLNVLRLQWIAKKLAFEKISFKKGVLRGYFITDKQSAFFDSIMFNKILHFAQIHPR
LCNLKEVKDSLRISFDNLNTIDEAVEMLEMVVN
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
gtgaatattcgcgacctgatcagcagatacaagacagatgagcgtattgtagcattggca
aaggcactaaacgccggtaaaggcactaaacttcaactaaagggtctagtaggttctgcc
gatgcaacaattgctgtggccatctatttcctgttacataaaccccagctatttgtactt
cccgatagggaagaggcggcctattttctggccgacctggaaagtatcctcgataaagag
gtactgctctttccttcttccttccgtaaagcctttgattttacacaagtggataccgcc
aatgtgctggcgcgtgccgaagtactgaacgaactgaaccaccagtcagaatacggcaaa
attgtggtttcctatcctgaggccctggccgaaaaggtgatagaccgcaccgtgctggaa
aaaaacacgctggagatcagtttaaatgccaaactgggcatcgattttatcaatgagttt
ctaatcgactacgattttaaccgtacagattttgtatatgaacccggacagttttccatc
cgtggcggtatcgtcgatatcttttccttctcgcacgacctgccttaccgcatcgagttt
tttggcgatatcgtggaaagtatccgtacttttgaaattgaaagccagctttccgttgaa
gatgtaaaaacactgaccatcattcccaatgtacaatcaaaataccttaccgaaaccaac
atcagtatcctcgactacattgaaaaggatacccaggtttggtttaaggacgtagaattc
actttggacattgttaaaagtggatataaaaaagcggttgaactatggaaagccctgccc
gcaaaagaaaaacaggaaaaccaggactggatagatcctaaatttgcttttacagacgag
aaaatgatgggcgatatgttccacgattttccgcttgtagaatttggaaagcagttcttt
tataaaacagatcaggtttttcagttcgaaatcaaaccccaaccctcttttaacaaagat
ttcagcctgctgatccacaaccttaaagaaaacgaaaaacagggcctgcataactttatt
ttcagcgcttcagttaaacaaacggaacgtttatatgccatcctggacgatatcgacaaa
tctgtcaaatttacaccggtaaatatcccgctcagggagggttttgtagatggggggcag
aaagtggccttttataccgatcaccagattttcgaccgtttttataaatataagctcaaa
agaggctatcagcgcagtcaggctatcaccttaaaagaactgagggacctgaagcccggc
gattttgtaacccatatagaccatgggataggtaaatatgccggtttggaaaaggtagag
gtaaacggtaaaacccaggaaatgatcaggctggtctatgccgataacgacctgctgtat
gtcaacatcaactcccttaaccgcattgccaaatacagtggaaaagatggtactgctcca
aaaatgaacaaactgggcacagaggcctgggataagctcaaaaaaacaactaaaaaaaaa
gttaaggacattgcccgagacctgatcaagctgtatgccctgcgaaaatcgcaggtagga
acagctttcgcgcccgatggctatcttgaaaccgagctggaagcctcctttatttatgaa
gatacgcccgatcaggaaaaggcaaccagcgatgtaaaaaaggacatggaagcgccacat
cccatggaccggctggtttgtggtgatgtgggcttcggtaaaacggaaattgccatcaga
gctgcttttaaggcggttgccaatggcaaacaggcggccgtactggtgccaaccaccatt
cttgccctccagcactttaaaacttttaccggtcgattaaaggactttccctgcaccgta
gattacatcaaccgctttaaaacaagcaagcagatcaaagaaacgctggctaaagtggcc
gaaggcaaagtagatatcatcattggcacgcaccgcctgctcagtaaggatgtgaagttt
aaagatctgggcatcatgatcatcgatgaggagcagaaattcggggtatcttccaaagag
aaattaagggctttaagggtaaatgtagataccttaacccttaccgcaacccccataccc
agaacactgcacttctctttaatgggggcccgcgacctttccatcatgagtaccccgcca
ccaaaccggcaggctgtaaatacagaattacatgtttttaacgataaactgatccaggaa
gccgttcagtttgaactggacaggggcggacaggtgttttttatccataacagggtgcac
gacctccctcaactggggggattgatccagacgctggtcccaaaagcccgtattggtatt
gcacacggacaactggatggcgatcagctggaagatgtgatgctcgattttatcaatgga
gaaaaggatgtcctggtagccaccaccattatcgaggccggtcttgacatcccaaatgcc
aataccatcatcatcaaccatgcgcatatgtttggcctgagcgacctgcaccaaatgcga
ggcagggtaggccggtccaataaaaaagccttctgttacctgcttagcccgcctttaagt
acgcttacttcggaagcccgcaaacgcctgagtgcaattgaagagttttcagaccttgga
agcggttttaacattgccatgagggatctggacatccggggtagcggaaacctcttaggc
gccgagcaaagtggcttcattgccgaaataggtttcgagatgtaccacaaaatactggat
gaagccatacaggaactgaaaacagatgaatttaaagacctgtttaaggatgagccctta
cgcccctttgtgaattttacacaagtggataccgacctggagctgtatattccggatgat
tatgtaaccaacattaccgaaaggtataacctctataccgaactttcaaaaattgaggat
gaaaaccagctaaaggcgtttgaactgagtttaaaagaccgttttggtcctgttcctcat
ccggtaaaaaccatgttgaatgtattgcggctgcaatggatagccaaaaaactggctttc
gaaaaaataagtttcaaaaaaggtgtattgcgcggttatttcattaccgacaaacaatct
gccttttttgattctattatgttcaataaaatattgcattttgcacagatccacccgcgt
ttatgcaatcttaaagaagttaaagattcactccgcatttcattcgacaacctcaatacc
atagatgaagctgtagaaatgctggaaatggtggtcaattaa
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