Pedobacter heparinus: Phep_1702
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Entry
Phep_1702 CDS
T00978
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
phe
Pedobacter heparinus
Pathway
phe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
phe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Phep_1702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phe03400
]
Phep_1702
Enzymes [BR:
phe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Phep_1702
DNA repair and recombination proteins [BR:
phe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Phep_1702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
DNA_primase_S
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
ACU03913
UniProt:
C6XUR3
LinkDB
All DBs
Position
2014770..2017403
Genome browser
AA seq
877 aa
AA seq
DB search
MGLDKYNHKRDFNKTAEPKAGKSKDADQLHFVIQKHDASHLHYDFRLEMEGVLKSWAVPK
GPSTDPKVKRLAMMVEDHPYDYKDFEGIIPKGEYGGGTVIVWDEGTYEPIEEIKGKKAQD
KYLRKQLKEGSLKIKLQGKKLKGEFALVKTRGMGENGWLLIKHKDDYAATADITKQDKSV
LSGKTIAAMEQTSDKVWQHGHEEKLEKAPKKKIPIGMKPMLATLVDEPFDDPDWVYEVKW
DGYRALGFSRKNGDVQLLSRNNKPFNEKFYPIYEVMQNWKIDAVVDGEILVLNDKGVSNF
AELQNWRSEADGELVYYVFDLIWYDGKDLTGLSLLQRQAILKSILPQDDDRIRLSKVFTA
EGTEFFEAAKKMGLEGIIAKKGSSTYTPGNRSTDWLKIKINKRQEVVIAGFTKNKDSSKQ
FSSLLLGVYERGHLQYVGKVGTGFSDQLQKEMMKQFEPLMITKSPFDEIPDVNKPSRFRP
NPPQAKATWLKPELVCEVAYAEVTSDGVFRHPSFQGMRIDKKAKDVIREAAVETKAVVNL
DMETDDMAKTNKHAKAIKPPKAAARKTLLNPKDETQVRKVCGHELKFTHLSKVYWPEDQV
TKRDLFNYYYQVAEYILPYLKDRPMSLNRFPGGINGQSFYQKDVKGKAPDWARTFPYTTG
EGEAKEYLVGDDEATLLWMVSLGCIEMNPWFSRVKSPDNPDYCVIDLDPDKQNFDQVVEA
ALTVKEVCDQMDVPSFCKTSGSTGIHIYIPLAAKYSYDQSQMFARIIVSLVHQRIPEYTS
LERMIPARKGKMYLDFLQNRPGATIAGPYSLRPKPGATVSMPLHWEEVKPGLKMTDFTIF
NALERLKSEGDFFRGVLGKGIDLEKTIHKAKGVFGNS
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgggacttgacaagtataaccataaacgcgattttaacaaaactgctgagccaaaagct
ggcaaatctaaagatgctgatcaattacattttgtaatccagaaacatgacgcttcccac
cttcattacgatttcagactggaaatggaaggcgtgttaaaaagctgggcagtaccaaaa
ggaccgtcaacagaccctaaggtgaaacgtctggccatgatggtggaggatcatccgtac
gactataaagattttgagggcataattcctaaaggagaatatggtggtggaacagtgatt
gtttgggatgagggtacttatgaacctattgaagaaattaaaggaaaaaaagctcaggat
aagtacttgcggaaacagctgaaggaaggatcgctgaaaataaaactgcagggcaaaaaa
ctaaaaggggaatttgccctggttaaaacccgcggcatgggcgagaatggatggttgctg
atcaagcataaggatgattatgcagctacggcagatattactaaacaggataaatcagtg
ctatccggcaaaaccattgctgccatggaacagaccagtgataaagtatggcagcatggt
catgaggaaaaactggaaaaagcacccaaaaaaaagatacccataggcatgaaacccatg
ctggcaacgctggttgacgagccatttgatgatccggactgggtttatgaggtgaaatgg
gacggctacagggcgctcggcttcagcaggaaaaacggtgatgtacaattgctttcacgc
aataacaaaccattcaatgaaaaattttaccccatttacgaggttatgcaaaactggaaa
attgatgccgttgtagatggggaaatactcgtgctgaatgacaaaggagtctccaacttt
gctgaactgcaaaactggcgcagcgaagctgatggcgaactggtgtattacgtttttgac
ctgatctggtatgatggaaaagaccttaccggcttaagcttattgcagcggcaggcaatt
ttaaaaagcatattgccccaggacgatgaccgcattcgcctgagtaaggtatttaccgcg
gaaggaaccgagttttttgaggctgccaaaaaaatgggattggaaggcattattgccaaa
aaaggaagcagtacctatacaccgggcaaccgaagtaccgactggctgaaaattaaaatt
aacaaaaggcaagaggtggtgatagcgggttttaccaaaaataaggatagttcaaaacaa
ttcagttctttactgctgggtgtttatgaaagggggcatctgcagtatgtaggtaaggta
ggtacgggcttttctgatcagttgcaaaaggaaatgatgaagcagtttgaaccattaatg
attactaaaagtccttttgatgaaattccggatgtgaacaagccttcccgttttcgtccg
aacccacctcaggcaaaggcaacctggttaaaacctgaactggtttgtgaagtggcttat
gcagaagtcacttcagatggggtattcagacatccttcttttcagggcatgcgtatagat
aagaaagcaaaagacgtaataagggaggctgcagtagaaacgaaagctgttgtaaattta
gatatggagacagatgacatggctaaaacaaataaacatgcaaaggcgattaagccgccc
aaggctgctgcccgcaaaactttgctgaaccctaaagatgaaacccaggttcgtaaagtt
tgcggacatgaactgaaatttactcatttgagcaaagtatactggccggaagatcaggta
accaaaagagacctgtttaattattattaccaggttgcggagtacatattgccctacctg
aaagaccggcccatgtcattgaatcgctttcctggtggtattaatggtcagagtttttat
cagaaagatgtaaaaggaaaggcaccggactgggccagaacttttccttatactacgggt
gagggcgaagctaaagaatacctggtgggggatgatgaggccaccttactttggatggtc
tctcttggctgcattgaaatgaatccctggtttagcagggtaaaatcgcctgacaacccg
gactattgtgtgatcgaccttgatccggataagcagaattttgatcaggttgtagaagcg
gcccttacggtaaaggaggtttgcgaccagatggatgtgccaagtttttgtaaaacatcc
ggttctaccggtatccacatttatatcccccttgctgcaaaatacagttatgaccaatcg
cagatgtttgcaaggatcattgtcagtctagtccatcagcggattccggaatataccagc
ctggaacggatgattcctgcgcgcaagggaaaaatgtacctcgactttttgcaaaaccgt
ccgggggcgaccattgccggcccttattcattaagaccaaaaccaggtgcaacggtttct
atgcccctgcattgggaggaagtaaagcctggtttaaaaatgactgattttactattttt
aatgcgctggaacgtttaaaaagtgaaggtgatttttttagaggcgtactgggaaaaggc
attgatctggaaaaaacgattcataaagccaaaggtgtttttggcaatagttaa
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