Pseudopodoces humilis (Tibetan ground-tit): 102107506
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Entry
102107506 CDS
T02921
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03013
Nucleocytoplasmic transport
phi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102107506 (UPF1)
03015 mRNA surveillance pathway
102107506 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phi03019
]
102107506 (UPF1)
Enzymes [BR:
phi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102107506 (UPF1)
5.6.2.5 RNA 5'-3' helicase
102107506 (UPF1)
Messenger RNA biogenesis [BR:
phi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102107506 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102107506 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102107506
NCBI-ProteinID:
XP_005531721
LinkDB
All DBs
Position
Unknown
AA seq
1117 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPAQGQG
PPGAGQGAPGPLEAQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD
RMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKT
VLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV
VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRT
AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG
DHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSL
QNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLL
KAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSC
VRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEG
PLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQ
THDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQ
KNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDS
YLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgcggacacacagggctccgagttcgagttcaccgacttcaccctc
cccagccagacacagacgccgcccgggccgggccaggcggggccggcacagggccagggg
cccccgggcgcggggcagggagctccgggcccgctggaagcgcaggtgaatggtcctgat
gggatcctgcagaatggagctgtggatgagaacgtggccaagaccagccagctcctggct
gagctcaacttcgaggaggatgaggaggacacttactacaccaaggatctccccgtgcac
gcctgcagttactgtgggatccacgaccctgcctgtgtggtttactgcaacaccagcaag
aaatggttctgcaacgggcgtgggaacacctctggcagccacatcgtgaatcacctggtg
agagccaagtgcaaagaggtgactctgcacaaggacgggcccctgggagagaccgtcctg
gagtgttacaactgcggctgccgcaacgttttcctgctgggcttcatcccagccaaggct
gactccgtggtggttctgctctgcaggcagccctgtgccagccagagcagcctaaaggac
atcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctctcctgg
ctggtgaagatcccctcggagcaggagcagctccgcgcccggcagatcacggcccagcag
atcaacaaactggaggagctctggaaggaaaatccatctgcaaccctggaggacttggaa
aaacctggtgttgatgaggagccccagcatgtcctgcttagatacgaagatgcttatcaa
taccaaaatatatttggtcctctggtcaagcttgaggcagattatgacaagaaactcaag
gaatctcagacccaagataacatcacagtcaggtgggacctgggcttgaacaagaagaga
atcgcttatttcactttgccaaagactgattcagacatgcgcctcatgcaaggagatgag
atctgcctgaggtacaagggagacctggccccgctctggaagggaattgggcacgtgatc
aaagttcccgataattatggtgatgagatagccatcgagctgaggagcagcgtgggagct
ccagtggaggtcactcacaacttccaggtggattttgtgtggaaatccacttcttttgac
aggatgcagagcgctctgaaaacgtttgcagtggacgagacctcggtgtctgggtacatt
taccacaaactgctgggccacgaggtggaagatgtcatcatcaaatgccagctgcccaaa
cgcttcacagcccagggactccctgatctcaaccactctcaggtttatgctgtcaagacc
gtcctgcagcgtcctctgagccttatccagggtccccctggcactgggaaaacggtgaca
tcggccaccatcgtctatcacctggccaggcagggcaatgggcccgtgctggtgtgtgcc
cccagcaacatcgccgtggatcagctgacggagaagatccaccagaccggcctcaaggtg
gttcgtctgtgtgccaagagccgcgaggccatcgactcgccggtgtccttcctggccctg
cacaaccagatccggaacatggacagcatgccggagcttcagaagctgcagcagctcaag
gatgagactggagagctttcctctgctgatgagaagcgttaccgggcgctgaaacgcacg
gcagagcgggagctgctcatgaacgccgatgtgatctgctgcacctgtgtgggagctggc
gatccccgcctggccaagatgcagttccgctccatcctcatcgacgagagcacgcaggcc
accgagcccgagtgcatggtgcccgtggtcctgggggcaaagcagctgatcctggtgggt
gaccactgccagctggggcccgtggtgatgtgcaagaaggcggccaaggcggggctgtcg
cagtcgctgttcgagcggctggtggtgctgggcatccggcccatccgcctgcaggtgcag
taccgcatgcaccccgcgctcagcgccttcccctccaacatcttctacgagggatccctc
cagaacggcgtcaccgcagctgacagggtgaagaaaggcttcgatttccagtggccccag
cctgacaaacccatgttcttctacgtgacccagggacaggaggagattgccagctcaggc
acctcttacctgaacaggacggaagctgccaacgtggagaagatcaccaccaagctgctc
aaggctggggccaagcctgaccagattggcatcatcaccccctacgagggccagcgctcc
tacctggtgcagtacatgcagttcagcggctccctgcacacaaagctctaccaggaagtg
gaaattgcgagtgtggacgccttccagggcagggagaaggatttcatcatcctgtcctgc
gtgagggccaacgagcaccaggggatcggcttcctcaacgaccccaggaggctcaacgtg
gccctgacaagagccaggtacggggtgatcatcgtggggaaccccaaagccctgtccaag
cagcccctctggaatcacctcctgaattactacaaggagcagaaggtgctggtggaggga
cccctcaacaacctgcgcgagagcctcatgcagttcagcaaaccccgcaagctcgtcaac
accatcaaccccggtgcccgtttcatgaccactgccatgtatgatgcacgggaggccatc
atccctggctctgtctacgaccgcagcagccaagggcgtccctccaacatgtacttccaa
acccacgaccagattgggatgatcagcgccggccccagccacgtcactgccatgaacatt
cccatccccttcaacctcgtcatgccccccatgcctcccccgggctacttcggccaggcc
aacggccccgctgcaggccgcggggctcccaaaggaaagaccggccgcggagggcggcag
aaaaaccgatttgggattcctggcacgagccagtccaacctccccaacagccaggccagc
caggacgtggtgtcccagcccttctcccagggccccctgacccagggctacatctccatg
agccagccctcacagatgagtcagcctgggctctcccaaccggaattatcccaggacagt
taccttggtgatgagtttaaatcccagattgacgtggcgctgtcacaggactcaacttac
cagggggaacgagcatatcaacatggtggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
