Pseudopodoces humilis (Tibetan ground-tit): 102114180
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Entry
102114180 CDS
T02921
Symbol
CHD4
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 4 isoform X1
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102114180 (CHD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phi03036
]
102114180 (CHD4)
Chromosome and associated proteins [BR:
phi03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
102114180 (CHD4)
Chromatin remodeling factors
NuRD complex
102114180 (CHD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
HDA2-3
ResIII
DEAD
PHD_2
Motif
Other DBs
NCBI-GeneID:
102114180
NCBI-ProteinID:
XP_014108852
LinkDB
All DBs
Position
Unknown
AA seq
1925 aa
AA seq
DB search
MASGIGSPSPCSGGSDDDEMEILLNSAIPQHPEPEEEPEEELLSEADTPKIKKKKKPKKL
KEPKVPKLSKRQKKELGDSSGEGNEFVEEEEEVLRSDSEGSDYTPGKKKKKKLGPKKEKK
NKAKRKEEEEEEEEDDDSKEPKSSAQLLEDWGMEDIDHIFTEEDYRTLTNYKAFSQFVRP
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTNVDAV
LPQPPVDVPLRKAKTKEGKGPNARRKPKASPRIPDIKKPKTKKVAPLKIKLGGFGSKRKR
SSSEDDDLDVESDFDDASINSYSVSDGSTSRSSRSRKKLKAGKKKKKGEEDSTVAVDGYE
TDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQWEAKED
NSEGEEILEDVVGDAEEEDDHHMEFCRVCKDGGELLCCDACPSSYHIHCLNPPLPEIPNG
EWLCPRCTCPALKGKVQKILIWKWGQPPVGPAPPRPPDADPNAPPPKPLEGRPERQFFVK
WQGMSYWHCSWVSELQLELHCQVMFRNYQRKNDMDEPPSGDFGGEEEKSRKRKNKDPKYA
EMEERFYRYGIKPEWMMIHRILNHSVDKKGNVHYLIKWRDLPYDQASWESEDVDIQDYDL
YKQAYWNHRELMRGEEGRPGKKLKKVKMRKLERPPETPTVDPTVKYDRQPEYLDVTGGTL
HPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLST
IINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFTFEDNAIRGGKKASRMKKEAAVKFH
VLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQ
NNLEELFHLLNFLTPERFHNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKNM
PSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFP
VAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFL
EHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDS
DWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSK
TGSMSKQELDDILKFGTEELFKDEATEGGDNKEGEDSSVIHYDDKAIERLLDRNQDETED
TELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQE
DLARNLGKGKRIRKQVNYNDGSQEDRGSRAVFLSDWQDDQSDNQSDYSVASEEGDEDFDE
RSEAARRPSRKGLRNDKDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRYGMPPQDAF
TTQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVM
SLIRKKVQEFEHVNGRWSMPELAEIEENKKLSQPSSPSPKTPTPSTPGDTQPNTPAPVPP
PEDGVKVEEGASAKEQGEPSEPEKELAASATETEAPMEQCAQAVETPPQEAKSPVNSTEA
DEKKVEETEAKERPDEPMEVESKADVEKVEDRAATENPPDPPIITLDEKDEKKDDDKRDV
VMLQNGEMLKESVDERHKKAVKQRFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHR
RHDYWLLAGIINHGYARWQDIQNDPRYAILNEPFKGEMNRGNFLEIKNKFLARRFKLLEQ
ALVIEEQLRRAAYLNMSEDPSHPSMALNTRFAEVECLAESHQHLSKESMAGNKPANAVLH
KVLKQLEELLSDMKADVTRLPATIARIPPVAVRLQMSERNILSRLANRSSEPPPPPPPQQ
VAQQQ
NT seq
5778 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgggcattggatctccatcaccatgctcagggggcagtgatgatgatgagatg
gagatcctgttgaacagcgctatcccccagcatccagaacctgaagaagagccagaggaa
gagcttctgtcagaggctgacactcccaagatcaagaagaagaagaagcccaagaaactg
aaggaacccaaagtgcccaagctcagcaagcgtcaaaagaaggagctgggggacagctct
ggtgaggggaatgaatttgtggaggaagaagaagaggttctgcgctctgacagtgagggc
agtgattatacccctgggaagaagaaaaagaagaaattaggacccaagaaggaaaagaaa
aacaaggccaagcgcaaggaggaggaggaagaggaggaagaagatgatgactcaaaggag
ccaaagtcatctgctcagcttctggaagattggggtatggaggatattgatcacatcttc
acagaggaggattaccgcacactcaccaactacaaagctttcagccagtttgtcagacca
cttatcgccgccaagaaccctaaaatagcagtgtcgaagatgatgatggtactgggagcc
aaatggagggagtttagcacaaacaaccccttcaagggaagttcaggtgcatctgtggca
gctgctgcagctgcggctgttgcagtagttgagagtatggtgacaaatgtggatgctgtc
ttgccgcagccccccgtagatgtgccactcaggaaagccaagacaaaggagggcaaagga
cccaatgcccggcggaagccaaaggccagtcctcgtattcctgatatcaagaaacctaaa
acaaagaaggtggcaccactgaaaatcaaactgggaggatttggttccaagcgtaaaaga
tcatcaagtgaagatgatgatctggatgtggaatcagactttgatgatgccagcatcaac
agctactctgtttcagatggatctacaagccgtagtagccgcagtcgcaaaaaactcaag
gctgggaagaagaagaagaaaggtgaggaggactccacagtggctgtggatggctatgag
actgatcaccaggactactgtgaggtgtgccagcagggaggagaaattatattgtgtgat
acctgccctcgtgcctaccacatggtttgcctggacccagatatggagaaagctccagag
ggcaaatggagctgcccacactgtgaaaaagagggcattcagtgggaagcaaaggaggat
aactctgaaggtgaggaaatcctggaggatgtagtgggggatgctgaggaagaggatgac
caccatatggagttctgtagagtctgcaaggatggaggagagctgctgtgctgtgatgcc
tgtccttcatcctaccacatccactgtctgaatcccccgctgcctgagattcctaatgga
gaatggctgtgtcctcgctgtacttgcccagctttgaaaggaaaggtgcagaagatcttg
atctggaaatggggtcagcccccagttggccccgcaccaccacgtcctcctgatgcagac
cctaatgctccacccccgaagcctctggagggtcggcctgagaggcagttctttgtcaaa
tggcagggcatgtcctactggcactgctcctgggtgtcagagttgcagctggagttgcac
tgccaggtcatgtttcgtaactaccaacgcaaaaatgatatggatgagccaccttcggga
gactttggaggggaagaagagaaaagccgaaagagaaaaaacaaggaccccaaatatgct
gagatggaggagcgtttctatcgatacgggatcaagccagagtggatgatgatccacagg
atccttaatcatagtgtggataagaaggggaatgtccactatttgattaaatggagagac
ctaccctatgatcaggcatcctgggaaagcgaagatgtggatattcaagattatgacctc
tacaagcaagcctactggaatcacagggagctgatgcgaggtgaagagggcaggcctggt
aagaagttaaagaaagtgaagatgcggaaactggaaagaccccctgagactcccacagta
gatccaacagtgaaatatgaccggcagccggagtacctcgatgtaacaggggggaccttg
catccctaccaactggaagggctgaattggctgcgcttttcctgggcccagggcacagat
acaatcttggctgatgaaatgggtctgggaaagactgtgcagacagcagtgttcctgtac
tccttatacaaagagggacactcaaagggtcccttcttggtgagtgcaccactgtccaca
atcatcaattgggaacgagagtttgagatgtgggccccagatatgtatgtagtgacctac
gtcggtgacaaagacagccgggccatcatccgtgagaatgagttcacttttgaggataat
gccatacgtggaggcaaaaaagcgtccagaatgaagaaggaggctgctgtcaagttccat
gtgcttctcacctcctatgaattgatcacaattgatatggcaatactaggctctattgac
tgggcctgtctcattgtggatgaagctcacagactgaagaacaatcagtctaagttcttc
cgtgtgttgaatggttactccctccagcacaagctgctgcttacaggaactcccctgcag
aacaacctggaagaactgttccacctgctgaacttcctgacgcccgagagattccataac
ttggagggcttcctagaagagtttgcggatattgccaaggaagatcagatcaagaagctg
cacgacatgctgggcccacatatgctgaggcgtctcaaggctgatgttttcaagaatatg
ccatctaagactgaactcattgtcagagtggagctgagtcccatgcagaagaaatattat
aaatacattttgacaagaaactttgaagcactgaatgcacggggtggtggtaaccaagtc
tcgttgctcaatgttgttatggatctgaagaagtgctgtaaccacccctacctctttcct
gtggctgctatggaagctccaaaaatgccaaatggcatgtatgatggcagtgcacttatt
cgagcctctggaaagctgttgctgctccagaagatgttaaagaacctgaaggaaggaggt
cacagagtgctcatattctctcagatgactaaaatgttggaccttctagaagattttttg
gaacacgaagggtacaaatatgagcggattgatggaggaatcacagggaacatgcgtcag
gaggctattgatcgcttcaatgctcctggagctcagcagttctgctttctgctttcaact
cgtgctgggggtcttggtattaacttggccacagcagatactgtgattatctacgattca
gactggaacccccacaatgatatccaggccttcagccgtgcacacagaattggacagaac
aagaaagtgatgatttaccgctttgtgacaagggcctcagtggaggagcgtatcactcag
gtggccaagaagaagatgatgctaactcacctggtagtgagaccaggattgggctcgaag
acaggctccatgtccaaacaggaacttgatgacattctcaaatttggcactgaagagctc
ttcaaggatgaggctactgaggggggggataacaaagaaggcgaggatagtagtgtcatc
cactatgatgacaaagcgattgagcgtctattggatcggaaccaggatgaaacagaagat
acagaacttcagggcatgaatgagtatctcagctccttcaaggtggcccagtatgtggtt
cgtgaggaggagatgggggaggaagaggaggttgaacgggaaattattaagcaggaggaa
tctgtggatcctgattactgggagaaactgctccgtcaccattatgagcaacaacaggag
gatctggccaggaatctgggcaagggcaaacgtattcgcaagcaggttaactacaacgat
ggctcgcaggaggatagaggctcacgtgctgtatttctttcagactggcaggatgaccag
tcagataatcagtcagactattcagttgcttctgaagaaggagacgaggactttgatgag
aggtctgaagcagctcgtcggcctagccgcaagggcctgagaaatgataaggataagcct
ctgcctcccttactggcccgtgtgggagggaacattgaggtgctgggtttcaacgctcgc
cagcggaaagccttcctcaatgctatcatgcgctatggaatgccacctcaggatgccttc
accactcagtggcttgttcgggacctccgtggcaagtcagagaaagagttcaaggcctat
gtctcgctgttcatgcgccatttatgtgaacctggagctgacggtgcagagacctttgca
gatggggtcccacgggaaggtctttctcgacagcatgtccttactcgcattggggtcatg
tcacttatacgcaaaaaggtgcaggagtttgagcatgtgaacggtcgctggagtatgcca
gaactggcagagatagaggagaacaagaaactttcacagcccagctcaccctctcccaaa
actccaactccttcgacaccaggggatacgcagccgaatacacctgcccctgttcctcca
cctgaagatggagtaaaagtagaagaaggagctagtgctaaggagcaaggagagccgtct
gaaccagagaaggagctcgctgcctctgctactgaaacagaggctcctatggagcagtgt
gctcaagctgtggaaacaccaccccaggaagcaaaatccccagtgaactccacagaggca
gatgaaaaaaaagtagaggaaacggaagcgaaggaaagaccagatgaaccaatggaagta
gaaagcaaagctgatgtggagaaagtggaagacagagcagctactgaaaatccccctgac
cctcctataatcactctggatgagaaagatgagaaaaaggacgatgataagagagatgtg
gtgatgctgcagaatggagagatgctgaaggagtcagtagatgaaaggcacaagaaggca
gtaaagcagcgcttcatgttcaacatagcagatggtggtttcactgaactacactccctc
tggcagaatgaagagcgggctgcaactgtcaccaagaagacctatgagatctggcatagg
cgtcacgactactggctcctagctgggattatcaatcatggctatgcccgttggcaggat
attcagaatgatccacgttacgccatcctcaatgaacccttcaagggtgagatgaacagg
ggtaacttcctggaaataaagaataagttcttggcgaggagatttaagctcctggagcaa
gcactggtgatcgaggaacagttgcggcgagctgcctatctgaacatgtccgaagatcca
tctcacccatccatggctctgaacacacgttttgcagaggtggaatgcctggctgagagc
caccagcacctatccaaggagtcaatggctgggaataaaccagccaatgctgtgctgcac
aaagttctgaagcagctggaggagcttttgagtgacatgaaggcagatgtgactcgcctg
cctgccacgattgcccgcatcccacctgtggcagtgcgccttcagatgtcggagcgcaac
atcctcagccgcctggccaaccgcagcagtgagcccccgccaccgccccctccccaacaa
gtggcccagcagcagtga
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integrated database retrieval system
