Prevotella histicola: J5A62_10685
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Entry
J5A62_10685 CDS
T07498
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
phis
Prevotella histicola
Brite
KEGG Orthology (KO) [BR:
phis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
phis03009
]
J5A62_10685 (rlmD)
Enzymes [BR:
phis01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
J5A62_10685 (rlmD)
Ribosome biogenesis [BR:
phis03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
J5A62_10685 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Met_10
TRAM
Methyltransf_15
PCMT
Methyltransf_25
N6_N4_Mtase
MTS
PrmA
Cons_hypoth95
Methyltransf_11
UPF0020
Motif
Other DBs
NCBI-ProteinID:
QUB84706
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All DBs
Position
2:606358..607782
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AA seq
474 aa
AA seq
DB search
MSRKRKPFPILENVTIEAVAAEGKCITHVDDKVVFVPFVVPGDVVDLQIRKKKKSYCEAT
VVRFISKSAIRVEPMCEHFGICGGCKWQNLPYSEQLKAKQQQVYDQLSRIGKVELPEFRP
IMGSVHTKAYRNKLEFGCANKRWYTAEELQALPEGVGLSEGAIGFHITGAFDKIYPIEKC
WLMDDLCNEIRNDIRDYALQSGMTFYDIRAQHGLLRDIMVRNSNTGEWMVLVQFHYDEDG
DDERAKALMQHIADRFPQITSLFYVDNQKGNDTFNDLDLTVFKGKDHIYETMEDLKFKVG
PKSFYQTNTEQAYHLYAVAREFADLTGNELVYDLYTGTGTIANFVAKNARKVIGIEYVPE
AIEDAKVNSEVNKISNTLFYAGDMKDILTESFIQKHGRPDVIITDPPRAGMHPDVVNVIL
GAHPERIVYVSCNPSTQARDLALLDSEYKVAAVQPVDMFPHTPHVENVVLLKKR
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgagtagaaagagaaagccattccctatacttgagaatgtcacgatagaggctgtggca
gccgaaggtaaatgtatcacacacgtagatgataaagtggtgtttgtcccctttgttgta
cctggcgacgttgtagatctgcagatacggaagaagaaaaagagctattgtgaggctacc
gtcgtacgctttatcagcaagagtgctatccgtgtggaaccgatgtgtgagcattttggc
atctgcggtggctgcaaatggcagaatcttccctacagtgagcaattaaaagcaaagcaa
cagcaggtgtatgaccagctgagtaggattgggaaagtggaacttccagagttccgaccc
atcatgggttcagtgcatacaaaggcatatcgtaacaaactggagttcggatgtgccaac
aaacgttggtatacagcagaagaactgcaggctttaccagagggagttggcttatccgaa
ggtgctattgggttccatattacgggggcttttgataagatttaccctattgagaagtgc
tggttgatggatgatctgtgcaacgaaatccgtaacgatatcagggattatgcattgcaa
agtgggatgactttctatgatatccgtgctcaacacgggttgttacgtgatattatggtg
cgcaattccaatacaggtgaatggatggtacttgtacaattccactatgatgaggatggt
gacgatgaacgggcaaaggctttgatgcaacacattgccgaccgtttccctcaaatcact
tctcttttctacgttgataatcagaaaggtaatgacacattcaacgaccttgacctcaca
gtcttcaaaggtaaggatcatatctatgagactatggaggacctgaagttcaaggttgga
cctaagagtttctatcaaacgaatacggaacaggcgtatcatctatacgccgtagcaaga
gaatttgccgatcttacaggcaatgaacttgtctatgacttatatactggtacaggaaca
atagccaacttcgttgctaaaaacgcccgtaaggtcattggtattgagtatgtaccggaa
gccattgaggatgctaaggttaattctgaggtaaacaagatcagtaacacactcttttac
gcaggtgacatgaaggacattctgaccgaaagcttcatccaaaagcacggtcgtcctgat
gttatcatcactgacccaccacgtgccggcatgcatcctgacgttgttaatgtcatcctt
ggggcacatccggagcgtattgtatacgtcagttgcaatccatcgacccaagcacgcgac
ctggctttgttggatagtgagtacaaagtagctgctgttcaacctgtcgatatgttccct
catacgccccatgtagagaacgttgtcttactgaagaagcgataa
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