Pelagibacterium halotolerans: KKY_1733
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Entry
KKY_1733 CDS
T01645
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
phl
Pelagibacterium halotolerans
Pathway
phl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
phl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KKY_1733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phl03400
]
KKY_1733
Enzymes [BR:
phl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KKY_1733
DNA repair and recombination proteins [BR:
phl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KKY_1733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
RNA_ligase
DNA_ligase_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AEQ51748
UniProt:
G4RCU3
LinkDB
All DBs
Position
complement(1724140..1726602)
Genome browser
AA seq
820 aa
AA seq
DB search
MARARDLLKEYRAKRDFTKTSEPQGGKGASSGNVFVVQKHDATRLHYDFRLEYEGVLKSW
AVTRGPSTDPADKRLAVRTEDHPLDYATFEGKIPQGEYGGGTVMLWDFGTWEPVEDANKG
FKSGKLKIRLKGDRMKGDWALIRMKPKSGEKRENWLLIKEHDDFATEGGSKLLDKSTSVS
TGRKMSAIEKGEPPVRKSKTGGRSLPKFVEPQLATLVDSVPGGNDWLFEMKYDGYRCIAV
ISGEDVRLYTRNGLDWTDTFASLVAPMSLLTESSMLLDGEICAFDENGKTSFSTLKSHLS
EGGPLVYFAFDLLEIDGKSLRAKPLSERKAALENVLGRRTRHDPVQFSPDISGKGTEVFS
AICKAGHEGIIAKHGAAPYRSGRGKSWLKVKCTLRQEFVIVGWSPSEKRRGVFASLLLAT
QQDGKLVYRGRVGTGFPDDLRADLQAMLDKDARKTAPLTGVPRQMARGARWVSPRHLAEI
AYTELTPDGILRHPSFLGLREDKPAKGIGLEQPGKAEGGHTLSLTEDTGIAAAEKAGIKL
SSPDKVLYPGQGVTKGKLAAYYASVAEAMMPYIANRPLSLVRCPAGRAKQCFFQKHDTGG
FAQGMDTVQITEKDGKSDSYFTLDGLEGLLAGVQMGVLEFHIWGSRRDAIEKPDRIVFDI
DPDEGLVFGDVKSAALDIRGRLADLGLETFAMVTGGKGIHVIAPIARRAEWPAVKAFAAG
FAKQMAEDEPERFTATLSKKARKGKLFIDYLRNERGSTAIAPYSTRAREGAPVAVPVDWN
EVERLNAANRFSLEAAVERARDNAWPGYGKLRQSLPKSTK
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggcccgggcccgcgatctcctcaaagaataccgcgccaagcgggattttacgaaaaca
agcgagccccaaggcggtaagggcgcatcctcgggcaatgtctttgttgtgcaaaagcac
gacgcgacgcggcttcattacgacttcaggcttgaatatgaaggagtgctcaagagttgg
gcggtaacgcgggggcccagcactgatcctgccgacaagcggcttgcagtgcgtacagaa
gatcacccgctcgattacgccaccttcgagggcaaaattccccagggcgaatatgggggc
ggcaccgtcatgctgtgggatttcgggacttgggagccggtcgaggacgcaaataagggc
ttcaagtccggcaaactcaaaatccgcctcaagggcgaccggatgaagggtgactgggcc
ctcatccgcatgaagccgaaatcgggtgaaaagcgcgagaactggctgctgatcaaggag
cacgatgatttcgccaccgagggcggctcaaaactactcgacaagagcaccagcgtgtcg
acgggccgcaagatgagcgccatcgaaaaaggagagccaccggtaagaaaatcgaagacg
ggtgggcgatccttgccgaaattcgtcgaaccccagcttgcaacgctggtcgacagcgta
ccggggggcaatgattggctgttcgagatgaaatatgacggctatcgctgcatagccgtc
atttcgggcgaagatgtccggctctatacgcgcaatggcctggactggaccgacacgttc
gcctcattggttgcacccatgtccctgctcacagaatctagcatgcttctggatggagaa
atctgcgcgttcgatgagaacggcaagaccagtttttcaaccttgaagtcgcatctttcc
gaaggcgggccgctggtctatttcgcgttcgatctgctcgaaatcgatggtaagtccttg
cgcgcgaagccgctttccgagcgcaaggcagcgcttgaaaacgtgttggggcgccgtacg
cgccacgaccccgtccaattttctcccgatatttcaggcaaggggaccgaggtgttttcg
gccatctgcaaggcggggcacgaaggcatcatcgcaaaacatggcgcagcgccatatcgg
tccggacgcggcaaatcctggctcaaggtcaaatgcacgttgcggcaggaatttgtcatt
gtcggctggtcgccctcggaaaagcgtcgcggcgtgttcgcttcgctgctccttgccaca
cagcaagatggcaagctggtttatcgcggccgcgtgggtacggggttccccgatgacttg
cgggccgatctccaggccatgctggacaaagacgcccgcaagaccgcgccactgaccggc
gtgccgcgccagatggcgcgcggcgctcgctgggtttcgcctcgtcatttggccgagatc
gcctacaccgaactgaccccggacggaattctgcgccacccgtctttccttggattgcgg
gaagacaaaccagccaaaggcatcggcctggaacagccaggcaaggccgaaggaggccac
accctgtcgcttactgaagacaccggaatcgccgccgccgaaaaggccggcatcaagctc
tccagccccgacaaggttctttatcccgggcagggggtaaccaagggcaagctggctgcc
tattatgcatcggtggccgaggcgatgatgccctacattgccaatcggcccctgagcctc
gtccgttgccccgccggccgcgcaaagcagtgcttttttcaaaagcacgacaccggcggg
ttcgcgcagggcatggataccgtgcagataaccgaaaaggacggcaagtccgacagctat
ttcaccctcgatggtctcgaaggcctgctcgcgggcgtgcagatgggagtgctggagttc
catatatggggctctcgccgcgacgccatcgaaaagccggacaggatcgtattcgacatc
gatcccgacgagggccttgttttcggcgatgtcaaatccgccgctctcgacattcgcggc
cggttggccgatctgggccttgaaacctttgcaatggtgactggtggcaagggcatccat
gtaatcgcgcctatcgcgcgccgcgccgagtggcccgccgtcaaggcgtttgctgccgga
tttgcaaagcagatggccgaggacgagccggagcggttcactgcaacgctttccaaaaag
gcccgcaagggcaaactgttcatcgattatctgaggaacgaacggggctcgacggccatc
gcgccttactccacccgggctagagaaggcgcgcccgtcgccgtccccgtcgactggaac
gaggttgaacggttgaacgccgccaatcgtttctcgctggaggccgcggttgagcgcgcg
cgggacaatgcctggccaggctatggcaagcttcgccaatcgttgcccaagtccacaaaa
tag
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integrated database retrieval system
