Pseudomonas hormoni: KJF94_06340
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Entry
KJF94_06340 CDS
T09556
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phom
Pseudomonas hormoni
Pathway
phom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KJF94_06340 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phom03400
]
KJF94_06340 (mfd)
Enzymes [BR:
phom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KJF94_06340 (mfd)
DNA repair and recombination proteins [BR:
phom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KJF94_06340 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QVW25200
LinkDB
All DBs
Position
complement(1378711..1382160)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIAALYRLPELSHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRTRLEASGYRYVDTVYEHGEFTVRGSLIDLFPMGSKLPF
RIDLFDDEIETLRTFDPENQRSIDKVDTVRLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPARELPNL
AIEAKATQPLAALAGFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KERLAITIAPLDEGLVLDNPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDDQAAEFLTLQYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFEDPKADYATFSAGFP
FEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVSVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLMRITALKLQAEVLGIKKV
DGGPQGGRIEFAAQTPVDPLTLIKLIQGQPKRYKFEGATMFKFMVPMERPEERFNTVEAL
LECLIPKTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaggctgccagcgctgccaagcgcttt
accctgctgctgaccgccgacagccaaagtgccgaacggctggaacaggagctgagtttc
ttcgccccggatttgccggtgctgcatttcccggactgggaaaccctgccctacgatctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccgccctttacaggctgccggag
ctgagccatggcgtgctggtggtgccgatcaccacggccctgcatcgcctggcgccgacc
aaattcctgctcggcagcagccttgtgctggacgtcggccagaagctagatgtcgagcag
atgcgcacccggctcgaggccagtggctatcgctacgtcgacaccgtgtacgagcacggc
gaattcaccgtccgcggctcgctgatcgatctgttcccgatgggcagcaaactgcccttt
cggatcgacctgttcgacgacgaaatcgagacgctgcgtaccttcgatccggaaaaccag
cgctccatcgacaaggtggacaccgttcgcttgttgccggctcgcgagtttccgctgcaa
aaagacgcggtcacccgtttcaaggcacgcttccgcgagcgcttcgatgtcgacttccgt
cgctgcccgatcttccaggatctgagcagcgggattacaccggcgggtatcgagtactac
ctgccgctgttcttcgacgaaacctcgacgctgttcgattacctgccccaggacacgcaa
gtgttttccctgccgggcattgaacaggcggcggaaaacttctggaacgatgtgcgcaat
cgttatgaagagcgccgcgtcgacccctctcgtcctttattaccgccggccgagttgttc
ctgccggtggaagattgctttgcccgcctgaagagctggccgcgtgtggtggccagtcaa
caggatgttgaaaccggtgtcggccgcgagcgcttcccggcgcgggagctgccgaacctg
gccatcgaggccaaggcaacgcagccactggcggcgctggcgggcttcctcgacgagttc
cccggtcgcgtgctttttaccgccgaatccgcgggccgtcgcgaagtgctgctggaactg
ctggaacgcctgaaactgcgaccgaaaaccgtcgatagctggccagacttcgtcgcgagc
aaggaacgcctggcgattaccattgcgccgctcgacgaaggcctggtactcgacaatcca
gcgctggcgctggtcgctgaaagtccattgttcggtcagcgcgtcatgcagcgccgtcgc
cgcgaaaaacgcgccgacgccaacaacgatgcggtcatcaaaaaccttaccgagctgcgt
gaaggcgcgccggtggtacacatcgatcacggcgtcggccgctacctcggattggcgacg
ctggaaatcgacgatcaggccgctgagttcctgaccctgcaatacgccgaaggcgccaag
ctatacgtgccggtcgccaacctgcatctgatcgcccggtataccggcagcgacgatgcc
ctggctccgctgcaccgtctcggctcggaaacctggcagaaagccaaacgcaaagccgcc
gaacaggtgcgcgacgtggcggccgaattgctcgacatctatgcccgccgtgccgctcgc
gaaggttatgccttcgaagacccgaaagccgattacgcaaccttcagcgccggtttcccc
ttcgaagaaaccccggaccagcaaaccaccatcgatgcggtgcgcgccgacatgctcgcg
ccgaagccgatggaccgcctggtctgcggcgacgtcggtttcggcaagaccgaagtggcg
atgcgcgcagcgtttattgccgtgcacggcggtcgccaggtggcgatcctggtgccgacc
accctgctcgcccagcagcactacaacagtttccgcgaccgcttcgccgactggccggtg
agcgtggaagtgatgagccgcttcaagtcgaccaaggaagtgaacgccgccgtggcggac
ctcgccgaaggcaagatcgacatcgtcatcggcacgcacaaactgctgcaagacgacgtg
aagatcaaaaacctcgggctggtgatcatcgacgaagagcaccgtttcggtgtccgtcag
aaagaacagctcaaggcgctgcgcagtgaagtcgacatcctcaccctgacggccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcccgtcgcctgtcggtgcggaccttcgtcatggagcaaaacaagagcacggtc
aaagaggccctgctgcgtgagttgctgcgtggcggtcaggtctactacctgcacaacgat
gtgaagaccatcgagaaatgcgccgccgacctcgccgaactggtgccggaagcgcggatc
ggtattggtcacgggcagatgcgcgagcgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcttcgaccatcatcgagaccggtatcgatgtgccg
agcgccaacaccatcatcatcgagcgtgccgacaaattcggcctggcgcagctgcaccag
ttgcgcggccgcgtcggtcgcagtcaccaccaggcttacgcgtatctgctgacaccgccg
cgccagcaaatcactccggatgcagaaaagcgcctggaagcaatcgccaatacccaggac
ctcggcgcgggcttcgtgctcgccaccaacgacctggaaatccgtggcgccggcgaactg
ctgggcgacggtcagagcgggcagatccaggccgtcggtttcaccctgtacatggagatg
ctcgaacgcgcggtgaagtcgatccgcaagggcgaacagccgaatctcgatcagccgctg
ggcggtggtccggaagtcaatttgcgtgtaccggcgctgattcccgaagactacttgccg
gacgtgcatgctcgactgatcctgtacaaacgcattgcctcggccaccgacgaggaaggc
ttgaaggacctgcaagtcgagatgatcgatcgtttcggcctgctgccggagccgaccaag
aacctgatgcgcatcacggcgctgaagttgcaggccgaagtgctgggcatcaagaaagtc
gacggcggcccgcaaggcggtcgaatcgaattcgcggcacagacaccggtcgatccgctg
acactgatcaaactgattcagggccagcctaaacgctacaaattcgaaggcgccacgatg
tttaaattcatggtcccgatggagcgcccggaagagcgctttaatactgtagaggcactg
cttgaatgcctcattccgaaaactgcttga
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