Pseudomonas hormoni: KJF94_08090
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Entry
KJF94_08090 CDS
T09556
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
phom
Pseudomonas hormoni
Pathway
phom03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
phom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KJF94_08090 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phom03400
]
KJF94_08090 (ligD)
Enzymes [BR:
phom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KJF94_08090 (ligD)
DNA repair and recombination proteins [BR:
phom03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KJF94_08090 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QVW25514
LinkDB
All DBs
Position
1713474..1716059
Genome browser
AA seq
861 aa
AA seq
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MNKNLDDYNRMRDFSATSEPAAKRSGKKAAKDHALQFCIQKHDASRLHYDFRLELDGALK
SWAVPKGPSLDPKVKRLAVHVEDHPIDYATFEGSIPEGHYGAGDVIVWDRGVWIPQEDPA
KAYAKGKLKFELQGEKLGGLWNLVRTHMPGKQEQWFLIKHQDSAAKPESDYDVVAAEPDS
VLSDRTIVAKKSKAADKPKPIKKPARKIAEKKQSAQLTGAHKATLPDLIKPELATLVEKA
PDGEWSYEIKFDGYRIMARIDHGEVKLFTRNGHDWTHKLPKQAEALASLQLESAWLDGEM
VVTNEQGVPDFQALQNAFDSGRSGNILYYLFDMPYLNGVDLREVPVEERRVALATVLKPN
EDPLLRFSDAFAEEPDALLNSACQMQMEGLIGKRLGSPYVSRRSSDWIKLKCKHRQEFVV
VGYTDPKGSRNAFGALLLGLHDRNSGELRYAGKVGTGFNETTLKSIYEQLKPLQTKKPSV
VNPPTGFDAKGVHWLKPVLLAEIAFAEMTKEGSVRHAVFHGLRDDKPAEDITEERPKVVK
KSTAEKPAPRQKKASEKTAPAPSQLGLGEGKVRITHPDRVIDASSGTTKVQLAEYYARVA
EWILPELKDRPVALVRAPDGIAGELFFQKNAERLAIPGITTLDKELTGQPIMIINSAEAL
IGAVQMSTVELHTWNATSDNLDKPDRFVLDLDPDPALPWKSMVEATQLTLSVLDELGLKA
FLKTSGGKGIHLVVPLTRKLGWDEVKDFSHAIVSHMAKLLPERFSAVSGPKNRVGRIFID
YLRNGLGATTICAYAARTREGLPVSVPIFREEVAGLKGGNQWNVHNVHERLAEVGDEPWA
DLKKTKQAITAEMRRRVGMKK
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaatctggatgactacaaccgcatgcgcgacttctcggcgacctctgaaccg
gccgccaaacgttcgggcaagaaagccgcgaaagatcacgccttgcagttctgcatccag
aagcacgacgcctcgcgcctgcattatgactttcgcctggaactcgatggcgcgctgaag
agttgggcggtgccaaaaggcccgtcgctggaccccaaggtcaagcgcctggcggtgcat
gtcgaagaccatccgattgattacgccacgttcgagggcagcattcccgaagggcattac
ggtgccggtgacgtgattgtctgggaccgtggcgtctggattccgcaggaagacccggcc
aaggcctacgccaagggcaagctcaagttcgagctgcagggcgagaagcttggtggcctg
tggaatctggtgcgtacgcacatgccgggcaagcaggaacagtggttcctgatcaagcat
caggacagtgcggccaaacccgaaagcgattacgacgtggtcgccgccgagccggacagc
gtactcagtgaccggaccatcgttgcgaaaaagtcgaaagcggcggacaagcccaagccc
atcaagaaaccggcgcgcaaaatcgcggaaaaaaaacagtcggcgcaactgaccggtgcg
cacaaagcgacattgccggacctgatcaagcccgaactggccacgctggtggaaaaagcc
ccggacggcgaatggagctatgagatcaagttcgacggctatcggatcatggctcgcatc
gaccatggcgaggtcaagctgttcacccgcaacggtcacgactggacccacaaactgccg
aaacaagccgaggcgctggcttcgctgcaactcgaatccgcctggctcgatggcgagatg
gtggtgaccaacgagcagggcgtgccggactttcaagcgctgcaaaacgccttcgactcc
gggcgcagcggcaacattctttactacctgttcgacatgccgtacctcaatggcgtggac
ctgcgcgaggtgccggtcgaagagcggcgggtcgcgctggcgacggtgctcaagccgaac
gaagatccgttgctgcggttctccgacgcgttcgccgaagaacccgacgccttgctcaac
agcgcctgccagatgcagatggaagggctgatcggcaaacgcctgggctcgccttacgtg
tcgcgtcgcagcagcgactggatcaaactcaagtgcaagcatcgacaagagtttgtggtg
gtcggctacaccgatccgaaaggatcgcgcaatgcgtttggtgcgttgctgctggggctg
catgaccggaacagcggggagctgcgctatgccggcaaggtcggcacgggcttcaacgag
acaacgcttaaaagcatctacgaacaactgaaaccgttgcagaccaagaaaccttcggtg
gtcaatccaccgaccggttttgacgccaaaggtgtgcactggctcaaacccgttctgctg
gctgaaattgccttcgccgaaatgaccaaggaaggctctgttcgccatgccgtgttccat
ggtctgcgcgacgataagccggccgaagacatcaccgaggagcgtccaaaagtggtgaag
aaaagcacggcagaaaaacctgccccccgccaaaagaaagcctcggaaaaaaccgcaccg
gcgccgtcacaactcggcctgggcgagggcaaggtgcggatcactcacccggaccgggtc
atcgacgccagcagcggcaccaccaaagtgcaactggcggagtattacgcccgcgtcgcc
gaatggattctgcccgaattgaaagaccggcccgtggcgctggttcgcgcgccggacggt
attgccggtgaactgtttttccagaagaacgccgagcgcctggccattccggggatcacc
accctagacaaggaactcaccggccaaccgatcatgatcatcaacagcgccgaagcgctg
atcggcgctgtgcagatgagcaccgtcgagctgcacacctggaatgccacttcggacaac
ctcgacaagcccgaccgcttcgttctcgacctcgacccggacccggcgctgccgtggaaa
agcatggtcgaggcgacccaactgacgctgtcggtactggacgaactgggactcaaggcc
ttcctcaagaccagcggcggcaaaggcatccacctcgtggtgccgctgacccgcaagctc
ggctgggatgaagtgaaggatttcagccacgctatcgtcagccacatggccaaactgttg
ccggagcggttttccgcggtgtcggggccgaagaaccgggtggggcggatcttcatcgat
tacctgcgcaacggcctcggcgccaccaccatttgtgcttacgcggcgcgcacccgcgaa
gggctgccggtgtcggtgccgatctttcgcgaggaagtggccgggctcaagggcggcaat
cagtggaacgtgcacaatgtgcatgaacgcctggccgaggtgggcgacgagccttgggcc
gacctgaagaaaacaaaacaggcaattaccgccgagatgcggcggcgggtggggatgaag
aagtag
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