Pauljensenia hongkongensis: BH719_03720
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Entry
BH719_03720 CDS
T09763
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phon
Pauljensenia hongkongensis
Pathway
phon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BH719_03720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phon03400
]
BH719_03720
Enzymes [BR:
phon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BH719_03720
DNA repair and recombination proteins [BR:
phon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BH719_03720
BRITE hierarchy
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AMP-binding
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AOS47076
UniProt:
A0A1D8B1R1
LinkDB
All DBs
Position
complement(891561..895145)
Genome browser
AA seq
1194 aa
AA seq
DB search
MLLTGLLPLLASDPAVAAAADSIAAGRSGALVAPSGLRAPIAAHIASRATTPVVVLTATG
REAEVMTAALASWTAGAAAFPAWETLPHERLSPQVDTMASRIAVLRRLAHPVQGDAFAGP
LSVLVVPVRSFLQPIIRGLADLEPVRIAVGDVVDLPEATARLSDLGYQRVDMVEARGQMS
VRGGILDVFPPQEPHPLRVELWGDEVEEIRAFSIQDQRTLGAAPHGLWAVPCRELLLSAP
VRARAREAADRLPGAAEMLSLAAEGIPAPGIESLAPVLASGMDRLVDLLPPGTPVLASDP
ERIRARAADLVATTDEFLRAAWSAAAGGAQVPLEASDASFLDLDDLWGAGGPWWELTSLP
PAELAEAAADGEDAGAGSDGGGSALVASPVLMRAGAREVRPYRGDFAAAAADLKSLAAQD
WRVVVTTEGPGPGRRIRTILAEAGCPVALSDSVDSDPGPGLVTITTAQGTAGFVAPDLRV
AVLTEGDMTGRAGATTRDMRRMPSRRRKGVDPLTLHPGDYIVHEQHGIGRFVELVSRTVG
RADAAATRDYLVIEYAPSKRGQPGDRLFVPTDALDQISKYTGSDEPSLTKMGGADWAKTK
ARAKKAVNEVAKELIRLYAVRQQTKGHAFGPDTPWQRELEDAFPYVETPDQLVTIDEVKA
DMEKPVPMDRLLTGDVGYGKTEIAVRAAFKAIQDGYQAAVLVPTTLLVTQHLETFSERYA
GFPVEIGTLSRFSTPKQTEEVKAGLASGRIDLVIGTHALLTGAVAFKKLGLVVIDEEQRF
GVEHKETLKALRTDVDVLSMSATPIPRTLEMAVSGIREMSILQTPPEERQPVLTFVGAHT
DAQVSAAIRRELLRDGQVFYVHNRVDSINSVAARVQSLVPEARVRVAHGKLGEHQLEAVI
QDFWNHEFDVLVCTTIVETGLDISNANTLIVDRADVFGLSQLHQLRGRVGRGRERAYAYF
FYPGDKALTQTAHERLKTIAANTDLGAGLAVAQRDLEIRGAGNLLGGAQSGHVEGVGFDL
YVRMVSDAVAAYRGEAPAQKADVRLDLAVDAHIPEDYVRGERLRLEVYAKIAAVSSPEQE
ADVREELADRYGPLPAQVDLLFAVARLREVLRRAGIGEAVTQGKYLRVSPVQLRDSQAMR
LKRLHPGAVIKAAVRQVLVPFPLTQRIGGAPLTDGPLLEWVETLVTRILTPFRE
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
gtgctcctcactggactgctgcccctgctcgcatccgacccggccgtcgccgccgcggcg
gactccatcgcggccgggcgctccggcgcactcgtggccccctcgggcctgcgcgcgccc
atcgccgcgcacatcgcctcgcgcgccaccacccccgtggtggtcctcaccgcgacgggg
cgcgaggcggaggtgatgaccgcggccctcgcctcgtggacggcgggggcagccgccttc
ccggcctgggagacgctgccgcacgagcgcctgtcgccccaggtggacacgatggccagc
cgcatcgccgtgctgcgccgcctggcgcaccccgtccagggcgacgccttcgccggcccc
ctgtccgtcctggtggtgcccgtccgctcgttcctgcagcccatcatccgcggcctggcg
gacctggagccggtgcgcatcgcggtgggcgacgtcgtggacctgccggaggccaccgcg
cgcctgtcggacctgggctaccaaagggtcgacatggtcgaggcgcgcgggcagatgagt
gtgcgcggcggcatcctggacgtgttcccgccccaggagccccatccgctgcgcgtggag
ctgtggggcgacgaggtcgaagagatccgggccttctccatccaggaccagcgcaccctg
ggcgccgccccccacggcctgtgggcggtgccctgccgggagctgctgctcagcgccccg
gtgcgggcccgtgcccgcgaggcggccgaccgcctgcccggcgcggccgagatgctgtcc
ctggccgccgagggcatcccagcaccgggcatcgagtccctggcgccggtcctggcctcc
ggcatggaccgcctcgtggacctgctgcccccggggacgccggtgctggcgtcggatcct
gagcgcatccgcgcgcgggcggcggatctggtcgccacgaccgacgagttcctgcgggcg
gcgtggagcgcggcggccggaggcgcccaggtgcccctggaggcctccgacgcctccttc
ctggacctcgacgacctgtggggggcgggcgggccgtggtgggagctgacgtccctgccc
cccgcagaactcgctgaggcggcggccgacggggaggacgcgggcgcgggctccgatgga
ggcggttccgccctggtcgcctcgcccgtgctcatgcgcgcgggcgcccgggaggtgcgc
ccctacaggggggacttcgccgccgcggccgcggacctcaagtcgctggcagcccaggac
tggcgggtcgtcgtcaccaccgagggccccgggcccgggcgccgcatccgcacgatcctg
gccgaggcgggctgccccgtcgccctgtcggactccgtcgactccgaccccgggcccggc
ctggtgaccatcacgactgcgcagggcaccgctgggttcgtggccccggacctgcgcgtc
gcggtcctcaccgagggcgacatgacgggccgcgcgggggccaccaccagggacatgcgg
cgcatgccgagccggcggcgcaagggcgtggaccccctcaccctgcacccgggcgactac
atcgtccacgagcagcacggcatcgggcgcttcgtcgagctggtcagccgcaccgtcggg
cgcgccgacgcggccgccacccgcgactacctggtcatcgagtacgcgccgtccaagcgc
ggccagccgggcgaccgcctcttcgtgcccaccgacgccctcgaccagatctccaagtac
acgggcagcgacgagccctccctcacgaagatgggcggcgccgactgggcgaagaccaag
gcgcgcgcgaagaaggccgtgaacgaggtcgccaaggagctgatccgcctgtacgccgtg
cgccagcagaccaaggggcacgccttcggccccgacacgccgtggcagcgcgagctcgag
gacgccttcccctacgtggagacccccgatcagctcgtcaccatcgacgaggtcaaagcg
gacatggagaagcccgtccccatggaccgcctgctcaccggcgacgtcggctacgggaaa
accgagatcgcggtgcgcgccgccttcaaagcgatccaggacgggtaccaggcggcggtc
ctggtgcccacgaccctgctggtcacccagcacctggagaccttctcggagcgctacgcc
ggtttccccgtcgagatcgggacgctgtcgcgcttctcgacgccgaagcagaccgaggag
gtcaaggcgggcctggcctcggggcgcatcgacctggtgatcggcacgcacgcgctgctg
accggggcggtcgccttcaagaagctgggcctggtcgtcatcgacgaggagcagcgcttc
ggcgtcgagcacaaggagaccctcaaggcgctgcgcaccgacgtggacgtcctgtccatg
tcggccacgccgatcccgcggaccctggagatggcggtctccgggatccgcgagatgtcg
atcctgcagacccctcccgaggagcgccagcccgtgctcaccttcgtcggagcccacacc
gacgcgcaggtcagcgccgcgatccgccgcgagctgctgcgcgacgggcaggtgttctac
gtgcacaaccgcgtcgactccatcaactcggtcgctgcccgcgtgcagtcgctggtcccc
gaggcgcgggtgcgcgtcgcccacggcaagctcggcgagcaccagctggaggccgtgatc
caggacttctggaaccacgagttcgacgtcctggtgtgcacgaccatcgtggagacggga
ctggacatctcgaacgcgaacaccctcatcgtcgaccgcgccgacgtgttcgggctctcc
cagctccaccagttgcgcggacgcgtggggcgcgggcgcgagcgggcctacgcctacttc
ttctaccccggcgacaaggccctcacccagaccgcccacgagcggctcaagaccatcgcc
gccaacacggacctgggggcggggctggccgtggcgcagcgggacctggagatccggggc
gcggggaacctgctgggcggcgcgcagtccgggcacgtcgagggcgtgggcttcgacctc
tacgtgcggatggtgtccgacgccgtcgccgcctaccgcggagaggcgcccgcccagaag
gccgacgtgcgcctggacctggccgtcgacgcccacatccccgaggactacgtgcgcggc
gagcggctgcgcctggaggtgtatgccaagatcgccgccgtctcctcacccgagcaggag
gcggacgtgcgcgaggaactggccgaccgctacggcccgctgcccgcccaggtggacctg
ctcttcgccgtcgcccgcctgcgcgaggtcctgcgacgcgccggcatcggcgaggccgtc
acccagggcaagtacctgcgggtgtcgccggtccagttgcgcgactcccaggcgatgcgg
ctcaaacgcctccacccgggcgcggtcatcaaggccgccgtgcgccaggtcctggtgccc
ttccccctgacgcagcggataggcggcgcgcccctgacggacgggccgctgctcgaatgg
gtggagaccctggtgaccaggatcctcaccccttttcgtgagtga
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