Paraburkholderia hospita: C2L64_08955
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Entry
C2L64_08955 CDS
T05305
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
phs
Paraburkholderia hospita
Pathway
phs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
phs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C2L64_08955 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phs03400
]
C2L64_08955 (ligD)
Enzymes [BR:
phs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C2L64_08955 (ligD)
DNA repair and recombination proteins [BR:
phs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C2L64_08955 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AUT68438
UniProt:
A0A1H6L8M0
LinkDB
All DBs
Position
1:complement(1999948..2002824)
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AA seq
958 aa
AA seq
DB search
MADKLDTYQRKRRFDATPEPSGTAARAKRATGAKGANTAARKTAKQHSLSFVIQEHDARR
LHYDFRLELDGTLKSWAVPKGPSLDPSVKRLAVHVEDHPLEYGSFEGSIPEGNYGAGSVI
VWDRGTWEPTGGEAGARDAYKAGKLKFHLNGEKLHGGWTLVRSHMRGSGDKEQWLLIKER
DDDARSEADFDVLEERQGSVLSDAPGARGGMNGTSGSGKAAAGKSKSKEERANASIKATK
AAASRRSKGTPADRPDIVATRNAESLRELAGHPSIEGAVKAKLPAALKPQLATLVDSAPA
GDDWVYEIKFDGYRVLARIDHASKDSVQIFTRAGNDWTAKFSKQVKAIARIGLDDAWLDG
EAVVLDSNGVPSFQALQNAFDAHRPQDITLYLFDLPYLNGYDLRGVPLEQRRAILHALLE
TVDDDTLRFSEGFGFDAGQLLKSACDMQLEGIIGKRRDSYYVSGRSPAWIKLKCRRRQEF
VIGGYSEPAGSREAFGALLLGVYDTKGKLQYAGRVGTGFDAAKLRSIKKELDARETQKMP
FASEPRERSRTPVHWVKPELVAECNFAEWTSDGVVRQASFVSLRSDKPAKQIVHEAPSKG
ADVQQMTEEMNAGQAKTSTAKKRASKTSDVEPTPATKRAKKSGVETRGKAATQSTSKAAT
ATISGVRISHPDRVIDKSTGARKIELAEYYASVASWMLPFLKDRPVALVRAPEDIGGELF
FQKHSQKLAIPNITQHPGLDPDHPPLLTIESEAALVGAAQMGTIELHTWNAVAANIEKPD
RMVFDLDPDPALGWKRMIEAAQLTRELLEELGLASFCKTSGGKGLHVVVPIAKQLGWDEV
KAFTQAVAQHMATALPKHFAAKMGAQNRKGKIFVDYLRNNRGSSTVCAFSLRARPGLGVS
VPLAWDEVPGTTAGDQWNIANLHERLDALKSDPWADYAKTKQRITAAMRRRLDMAEHD
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaagctcgatacctatcagcgcaagcgccgcttcgatgcaacgccggagccg
tcggggaccgctgcgcgggcgaagcgtgcaacgggcgcaaagggtgcaaacacagccgca
agaaagaccgcgaagcagcacagcttgtcgttcgtgatccaggaacacgacgcccgacgc
ctgcattacgacttccgtctcgaactcgacggcacgctcaaatcctgggccgtgccgaaa
ggaccgagcctcgatccgtccgtcaagcgacttgccgtgcatgtcgaagatcacccgctc
gaatacggttcgttcgaaggctcgattcctgaaggcaactacggcgcgggatcggtgatc
gtctgggatcgcggcacgtgggaaccgacaggcggcgaagcgggcgcgcgcgacgcgtac
aaggcgggcaagctcaagttccacctgaacggcgagaagctgcacggcggctggacgctg
gtgcgcagccacatgcgcggcagcggcgacaaggaacagtggctgctcatcaaggaacgc
gacgacgacgcgcgcagcgaagccgatttcgacgtgctcgaagagcggcagggcagcgtg
ctgtcggatgcgccgggcgcgcgcggcggcatgaacggcacaagcggctccggcaaagcc
gccgcaggcaaatctaagagcaaagaggaacgcgccaacgcatcgatcaaggcgacgaaa
gccgccgcatcacgcagatccaaaggcacgcccgccgaccgccccgacatcgtcgcgacg
cgtaatgcggaatcgttgcgcgaactggccggtcatccgtcgatagaaggggcagtcaag
gcaaagcttcccgccgcgctcaagccgcaactggcgacgctcgtcgacagcgcgcccgcc
ggcgacgattgggtctacgagatcaaattcgacggctaccgcgtgctggcgcgcatcgat
cacgcttcgaaagattccgtgcagattttcacgcgcgcaggcaacgactggaccgcgaag
ttcagcaagcaggtcaaggcgatcgcgcgcatcggactggacgatgcgtggctcgacggc
gaggcggtcgtgctcgacagcaacggcgtgccgagcttccaggcgctgcaaaacgcattc
gatgcgcacaggccgcaggacatcacgttgtacctgttcgacctgccgtatctgaacggc
tacgacctgcgcggcgtgccgctcgaacagcgtcgcgcgatcctgcacgcgctgctcgaa
accgttgacgacgacacgctgcgcttttccgagggcttcggcttcgacgccggccagttg
ctgaagagcgcatgcgacatgcagctcgaaggcatcatcggcaagaggcgcgacagctat
tacgtgtcgggtcgctcgcccgcctggatcaagctcaagtgtcggcgccgccaggaattc
gtgatcggcggctattcggaaccggcgggcagccgcgaggcattcggcgcgctgctgctc
ggtgtctacgacacgaagggcaagctgcaatacgcggggcgcgtcggcacgggtttcgac
gcggccaaactgcgttcgatcaagaaggaactcgacgcgcgcgaaacgcagaagatgccg
ttcgccagcgagccgcgcgaacgaagccgcacgcccgtgcattgggtgaagccggaactc
gtcgccgaatgcaacttcgcggaatggacgagtgacggcgtcgtgcggcaggcgtcgttc
gtcagcttgcgcagcgacaagcccgcgaagcagatcgtccacgaagcgccgagcaaagga
gccgacgtgcaacagatgacggaagagatgaacgccggacaggcgaagacatcgacggcg
aaaaagcgcgcgtcgaagacctcggatgtcgagccaacgcccgcgacaaagcgtgcgaag
aagagcggcgtggaaacgcgaggcaaggcggcgacgcaatcgaccagcaaggccgccacc
gcgacgatttccggcgtgcgaatttcgcacccggaccgcgtgatcgacaagagcaccggc
gcgcgcaagatcgagctcgccgaatactacgcgtcggtcgcgtcatggatgctgccgttt
ctgaaggaccggccggtcgcactcgtgcgcgcgccggaggatatcggcggcgaactgttc
ttccagaagcacagccagaagctcgcgattccgaacatcacgcagcatccggggctggac
ccggaccatccaccgctgctgaccatcgaaagcgaagctgcgctggtcggcgccgcacag
atgggcacgatcgaactgcatacatggaacgcggtggccgcgaacatcgagaaacccgac
cgcatggtattcgatctcgacccggacccggcgctcggctggaagcggatgatcgaagcg
gcgcagctcacgcgcgaactgcttgaagaactcggcctcgcgtcgttttgcaagacgagc
ggcggcaagggattgcacgtcgtcgtgccgatcgcgaagcagctcggctgggacgaggtg
aaggcgttcacgcaagccgtcgcgcagcacatggcgacggcgctgccgaagcacttcgcc
gcgaagatgggcgcgcagaatcgcaagggcaagatctttgtcgactatctgcgcaacaac
cgtgggtcgagcaccgtctgcgcattttcgctgcgcgcgcgaccggggctgggcgtatcg
gtgccgctcgcatgggacgaagtgcccggcacgacggcgggcgatcaatggaacatcgcg
aatctgcacgagcggctcgacgcgctgaaaagcgacccgtgggccgactacgcaaagacg
aagcagcgcatcacggccgccatgcggcgcaggctggatatggcggaacacgattga
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