Phyllobacterium zundukense: BLM14_01395
Help
Entry
BLM14_01395 CDS
T05167
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pht
Phyllobacterium zundukense
Pathway
pht03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BLM14_01395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pht03400
]
BLM14_01395
Enzymes [BR:
pht01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BLM14_01395
DNA repair and recombination proteins [BR:
pht03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BLM14_01395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ATU90466
UniProt:
A0A2N9W0Y4
LinkDB
All DBs
Position
complement(286953..289499)
Genome browser
AA seq
848 aa
AA seq
DB search
MVALETYRKKRDFKTTSEPKGRKARKTGNSFVIQKHDARRLHYDFRLEMDGVLKSWAVTR
GPSLVPGEKRLAVHVEDHPLEYGDFEGTIPKGEYGGGTVIIWDRGTWAPVHDPDRGYAKG
HMEFELHGKKLSGRWHLVRMQGKPREKHENWLLIKGEDEAARSERDPDILEEKPKSVKTG
REIAEVAGEDPGWSSKTGKIDKQAVKAKPSKKPVVADEATVPDPSSVKGAKKTRLPSFVE
PALAALAPKPPTGERWIHEIKFDGYRLQVRIEAGRVKLLTRSGLDWTKKFGKQIVAAFQD
LPVGTALIDGELVVETAAGASDFSALQADLSADRTDRFVFYIFDLLYLDGYNLQGLSLVE
RKTMLQELVSGASTLIRYSEHFEGNGALILDHACRLSLEGIVSKLRDAPYRPGRGKSWVK
SKCSERQECVIAGYVPSTTSRKAIGSLVMGVYNGKKLEHVGRVGTGYSASLAEDLYRRLE
RIRVQESPFAERLSADAARQVRFTKPELVADVEFRSWTADGNLRHAAFRGLREDKDPTEV
VREAARPAAPLKPEGHSVKLTHPDRIYWPEQGVTKEGLADYYTDVWKYVSPFVVGRPLAL
LRSPEGITGQSFFQKHAWKGLNPNIALVKDPKDKDGEPLISVNDLDGLIGLVQSAVLEIH
PWGSTIADWEHPDMIIMDLDPGDDVPWTKVIEAAQETRQRLEQAGLKAFLKTSGGKGLHV
VVPLKPKAAWPEVKAFTKAIADSMASDSPDLYVSTITKSKRKGKILIDYLRNQRGATAVA
PYSTRARPGAAVSMPLAWDELNPGIGPNYFTVLNTPIRVSSYKTDPWADFRAAAAPIEKP
KAPRKKST
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
gtggtcgcgcttgaaacctaccgcaagaaacgcgatttcaagacgacatccgaaccgaag
ggccgcaaggcccgcaagaccggaaacagcttcgtcattcaaaagcacgatgcacgacgg
ctgcattatgatttccggctcgagatggatggcgtcctgaaaagttgggccgtgacccgc
ggccccagtctcgttccgggtgaaaagcggctggctgtccatgtcgaagatcacccgctc
gaatatggtgactttgaaggaacgatacccaagggggaatatggcggcggcaccgtcatc
atctgggatcgcggtacatgggctccagtccatgatcccgaccggggctatgcgaaaggc
cacatggaattcgagcttcatggcaagaagctctccgggcgatggcacctggtgcgcatg
caaggcaagccgcgcgaaaaacatgaaaactggctgctgatcaagggtgaggacgaagct
gcgcgctcggaacgcgatcccgatatccttgaggaaaagccgaaatccgtaaaaaccggc
cgtgagattgccgaagtggccggtgaagacccgggatggtcgtcgaagaccggcaagatc
gacaagcaggccgtaaaggcaaagccttcaaaaaagcccgtcgtggcggatgaagccacc
gtccccgatccttccagcgtaaagggagcgaagaagactcgcctcccctccttcgtcgaa
ccggcattggctgcactcgcgccaaaaccgcccacaggcgagcgttggatccacgagata
aagttcgatggctatcgcctgcaggtgcggattgaagctggccgcgtcaagctccttacc
cgcagcggtctcgactggacgaaaaagtttggcaagcagatagtggcggcgtttcaggac
ctgcccgttggtacggcactcatcgatggtgaactggtggtggaaaccgcggctggcgcc
tcggatttttccgccctgcaggccgatctcagcgcagaccggacagaccgcttcgtcttt
tatattttcgaccttctctatctcgacggctataatttgcagggcctgtcgctggtcgaa
cgcaagaccatgctgcaagagcttgtcagcggtgcatcgacgctcatccgctacagcgag
catttcgagggaaatggtgcgctcattcttgaccatgcctgccgtctcagcctcgaaggc
atcgtatcgaaactgcgcgatgccccctatcgccccggtcgcggcaagagctgggtcaaa
tccaaatgttcagaacgccaggaatgcgtcattgcgggctacgtgccgtccacgacttcg
cgcaaggccataggctcgctggtcatgggcgtctataacggcaagaagctggaacatgtc
ggccgtgtcggcacgggctacagcgcatccctcgccgaagacctataccgcaggcttgaa
cgcattcgcgtgcaggaaagcccctttgccgagcgtctgagcgccgatgccgccagacag
gtacgctttacgaagccggagctcgtagcagatgtggaattccgcagctggactgcggac
gggaaccttcggcatgccgcctttcgcggcttgcgcgaagataaagatccaactgaagtc
gtccgagaagcagcaagaccggccgctccactcaaacccgaggggcactccgtgaaactc
actcatcccgatcgcatctattggcccgaacagggtgtcaccaaggaaggtctggcggac
tattacacggacgtctggaagtatgtctcgcccttcgtcgttggtcgcccgctggccctc
ctgcgaagtcccgaaggcatcaccggccaatccttcttccagaaacacgcctggaagggc
ctcaatccgaacatcgccctcgtgaaggaccccaaggacaaggatggcgaaccgctgatc
agcgtcaatgatctcgatggcctgatcggtctggtgcaatccgccgttctcgaaattcac
ccgtggggctcgaccattgccgactgggaacatccggacatgatcatcatggaccttgat
cctggcgatgacgtaccttggacaaaagtgatcgaagcggcacaggaaacacgtcagcgg
cttgaacaggccggcctcaaggcctttctcaagacctcgggaggcaagggccttcatgtg
gttgtgccactgaaacccaaggccgcgtggccggaggtgaaggctttcaccaaggccatc
gccgattccatggcgtcggacagccccgatctctacgtctcgacgatcaccaagtcgaag
cgcaaaggcaagatcctcatcgattatctgcgtaaccagagaggcgccaccgcagtcgca
ccatactctacccgtgcgcgtccaggtgcggcggtatcaatgcctctggcatgggatgaa
ctgaatcccggcataggacccaactattttaccgtattgaataccccgatccgggtttcc
tcatacaaaaccgatccctgggctgattttcgtgccgccgccgccccgatcgaaaaaccg
aaggcgccgcgcaagaagagcacctaa
DBGET
integrated database retrieval system