Pediculus humanus corporis (human body louse): Phum_PHUM244150
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Entry
Phum_PHUM244150 CDS
T01223
Name
(RefSeq) regulator of nonsense transcripts, putative
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
phu
Pediculus humanus corporis (human body louse)
Pathway
phu03013
Nucleocytoplasmic transport
phu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
Phum_PHUM244150
03015 mRNA surveillance pathway
Phum_PHUM244150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phu03019
]
Phum_PHUM244150
Enzymes [BR:
phu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Phum_PHUM244150
5.6.2.5 RNA 5'-3' helicase
Phum_PHUM244150
Messenger RNA biogenesis [BR:
phu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
Phum_PHUM244150
mRNA cycle factors
Common to processing body (P body) and stress granule
Phum_PHUM244150
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
AAA_16
SLFN-g3_helicase
DEAD
Helicase_RecD
nSTAND3
AAA_22
ATPase
SRP54
AAA_32
Motif
Other DBs
NCBI-GeneID:
8230783
NCBI-ProteinID:
XP_002426248
VectorBase:
PHUM244150
UniProt:
E0VJF4
LinkDB
All DBs
AA seq
1108 aa
AA seq
DB search
MSVDTYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSQSQTQASQLDVGPSQISQ
VQVNKIGGPSVIGIDNGVNSVTNALGDLQFEEEEEEGYYNKELPAFACKYCGIHDPNCVV
MCNVCKKWFCNGRGSTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYACGVRNVFVLG
FIPAKADSVVVLLCRQPCAAQTSLKDMNWEQEQWKPLILDRSFLTWLVKSPSETEQLRAR
QISAVQINKLEELWKDNVDATFQDLEKPGVDEEPQQVLLRYEDGFQYQNIFGPLVKLEAD
YDKKLKESQTQDNVEVRWDVGLNKKTIAYFTLAKQDGGKFILSKNMKLMHGDELRLRYLG
ELHKQWSGVGHVIKVPDNYGEEIGIELKSGAGAPTECTSNFVVDFVWKSTSFDRMQLGLR
KFAVDDSSVSGYIYHRLLGHDYEEVLLSRVQIPKHFSAPNLPDLNRSQVYAVKQALQRPL
SLIQGPPGTGKTVTSATIVYHLARQPTGAVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAK
SREAIDSPVSFLALHNQIRNMDSNTDLKKLQQLKDETGELSSSDEKRYRMLKKSSEKEML
EAADVICCTCVGAGDPRLARLKFHSILIDESMQSTEPECMVPVVLGARQLILVGDHCQLG
PVVMCKKAARAGLSQSLFERLVVLGIRPYRLEVQYRMHPELSRFPSDFFYEGSLQNGVCS
EERKLAKVDFPWPANDKPMLFYVTTGQEEIAGSGTSYLNRTEASNVEKIVTKFLRAGIKP
EQIGLITPYEGQRAYLVQFMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEL
LGIGFLNDPRRLNVALTRAKYGIIIIGNPKVLSKQPLWNHLLNFYKEQKVLVEGPLNNLK
ESAIQFAKPKKLVNSANPGTHFMSTTMYDAREAIVPGSVYDRTGQMNGNSYYQRQTGMGL
ELYGRTHDPMNYISPERAQAAMANMPVPMGMFMNMSHVPPRFYNLQQAAQARQNQRNKVV
SRNNKINKKSGLSQGLTISQEATQPYSQGVMSQPGMSQGMSQPGLSLSQESCIVGDFQSQ
MDGLLSQDSTYQGDRSGFFTGPPQFSQV
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgatacatatggccctagttctcaaactttaacttttttggatacggaagag
gctgatcttattggagctgacacgcagggttcagagtttgattttaccgattttacttta
ccatctcaaagtcaaacgcaagcttctcagttagacgtaggtccgagtcaaatttctcaa
gtccaggttaataaaataggaggaccatctgttattggaattgacaatggagttaattcg
gttacaaatgctttgggagatttacaatttgaggaggaagaagaagaaggatattataat
aaagaactacctgcattcgcttgcaaatattgtggaatacatgacccaaattgtgttgtg
atgtgtaatgtctgcaaaaaatggttttgtaatggcagaggtagtacatctggatcccac
ataataaatcatttagtgagagctaagcacaaggaagtaacccttcataaagatggtcct
cttggtgaaacagttttagaatgctatgcttgtggagttagaaatgtttttgttttggga
tttattcctgctaaagctgattcagttgtggttttactttgtaggcagccctgtgctgca
caaacttctttaaaggacatgaattgggaacaagagcagtggaaacctttaattttagat
cgcagttttttgacttggctggttaaatctccatccgaaactgaacagcttcgtgctaga
caaatatctgcagttcagataaacaaacttgaagaattgtggaaagataatgttgatgct
acatttcaagatcttgaaaagccaggagttgatgaagaacctcaacaagtattattaaga
tacgaggatggctttcaatatcaaaacatatttggaccacttgttaaattagaagctgat
tatgataaaaaattgaaagaatcacaaactcaagataatgttgaagttcgttgggatgtt
ggtttaaataaaaaaactatagcttattttactcttgctaaacaagatggaggcaagttt
atactttcaaagaatatgaaattaatgcatggagatgaattgcgccttcgttatttgggc
gaacttcataaacagtggtcaggagttggccatgtaattaaagtacctgacaattatggt
gaagaaattgggatagagctcaaatcgggggctggagccccaacagaatgtacatctaat
tttgttgtagattttgtttggaaatccacatcttttgaccgaatgcagcttggtcttcgc
aaatttgcagtcgatgattcctctgtatccggttatatttaccatcgtttattgggccat
gattatgaggaagtattactatctagagttcaaataccaaaacatttttctgctcctaat
ttacctgatttaaatagatcgcaggtttacgcagttaaacaagctttacaaagaccttta
tcgttaatacaaggtccacctggtacagggaaaactgttacatctgcaacaattgtgtat
cacttagctcgacaacccactggagccgttcttgtttgtgctccgagcaatattgcagtt
gatcaattaaccgaaaaaattcatagaacgggattaaaagttgtacgtctttgcgccaaa
agtagagaagccattgattctccagttagttttttagcgcttcataatcaaattcgcaat
atggacagtaacaccgatctaaaaaaactacaacaattaaaagatgaaacaggagaattg
tctagttctgatgaaaaacgatacagaatgttgaaaaagtcttcagaaaaagaaatgttg
gaagctgcagatgtaatttgttgtacttgtgtgggtgctggagatcctagattagcgcgt
cttaaatttcattcgattcttattgatgaaagtatgcagagtacggaaccagaatgcatg
gttcctgtcgttttgggagctcgtcagctcatattagtaggagaccattgtcaacttggg
cctgtagtaatgtgcaaaaaagcagcccgagccggattatctcaatctttattcgagaga
ttagtcgttcttggaattaggccttatcgccttgaggttcaatatagaatgcatcctgaa
ttatctcgatttccttctgatttcttttacgaaggctcgctgcaaaatggtgtttgttca
gaggagcgaaaacttgccaaagtagattttccgtggcctgcaaacgataaaccaatgctt
ttttatgtgacaactggtcaagaagaaattgccggttctggaaccagttatttaaatcga
acagaagcgtctaacgtagaaaaaattgttaccaaatttttaagagctggtattaagccg
gagcagattggtttgataacaccttatgagggacaaagggcttatttggttcaatttatg
caatatcaaggatctttacattcaaaattatatcaagaaatagaagtcgcaagtgttgac
gcttttcagggacgagaaaaagatattattattatgtcttgcgttcgatcaaatgaactt
ttaggtattggttttcttaatgatcctagacgattaaatgtagctttgacgcgagccaag
tatggaataataattataggaaacccaaaagttttatccaagcaacctctatggaatcac
cttttaaacttttataaagaacaaaaagttttagttgaaggtccgttaaataatttaaaa
gaatcggctattcagttcgctaaacctaaaaaactagtaaattctgctaacccgggaacc
catttcatgagtacaaccatgtacgatgcaagggaagctatcgtacctggatcggtatac
gacagaacaggacaaatgaatggaaattcttattatcagcgacaaaccggaatgggcttg
gaattgtacggtcgcacccatgatccaatgaattatatatctcccgaaagagctcaagct
gctatggctaacatgccagttcccatgggtatgtttatgaacatgtcgcacgttcctcct
agattttacaacctacagcaagctgctcaagctcggcaaaatcaacgaaataaagtggtg
agtcgaaataataaaataaacaaaaaaagtggattgagccaggggctaacgatttcacaa
gaagctactcaaccctacagtcaaggtgtcatgtctcaacctggaatgtcgcaaggaatg
tctcaaccgggtttgagtctgtcacaagaaagttgcattgtcggtgactttcaatcacaa
atggatggtttattgtctcaggactctacgtatcaaggagatcgttcggggttctttact
ggccctcctcaattttcacaggtataa
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integrated database retrieval system
