Pediculus humanus corporis (human body louse): Phum_PHUM268230
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Entry
Phum_PHUM268230 CDS
T01223
Name
(RefSeq) hypothetical protein
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
phu
Pediculus humanus corporis (human body louse)
Pathway
phu03020
RNA polymerase
phu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Phum_PHUM268230
09124 Replication and repair
03420 Nucleotide excision repair
Phum_PHUM268230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phu03021
]
Phum_PHUM268230
03400 DNA repair and recombination proteins [BR:
phu03400
]
Phum_PHUM268230
Enzymes [BR:
phu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Phum_PHUM268230
Transcription machinery [BR:
phu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
Phum_PHUM268230
DNA repair and recombination proteins [BR:
phu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
Phum_PHUM268230
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
8235561
NCBI-ProteinID:
XP_002426678
VectorBase:
PHUM268230
UniProt:
E0VKN4
LinkDB
All DBs
AA seq
1885 aa
AA seq
DB search
MATSDSKAPLRSVKRVQFGILSPDEIRRMSVTDGGIKYPETYEGGRPKIGGLMDPRQGVV
DRMSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFFCSKLLVSPNNAK
IKEIVTKSRGQPRKRLTFVYDLCKGKNICEGGDEMDITKDNADNPDNSKDKKGGHGGCGR
YQPNIRRTGLDLTAEWKHTNEDNQEKKIALSAERVWEILKHITDEECLILGMDPKFARPD
WMLVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKANNELIRNEQAGAAAHIISEN
IKMLQFHVATLVDNDMPGMPRAMQKSGKPLKALKARLKGKEGRIRGNLMGKRVDFSARTV
ITPDPNLRIDQVGVPRSIAQNLTFPEIITPFNIDKMQELVRRGNSQYPGAKYIIRDNGER
IDLRFHPRPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNL
SCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANKPVMGIVQDTLTAVR
KMTKRDVFLEKEQMMNILMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTH
STHPDEEDDGPYNCCGARRTYYGNFVQKTLGTSAGSLLHICMLELGHEVCGQFYGNIQTV
INNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQ
TFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEG
KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA
ETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQTLPTIKLSNKA
FEKRFRFDATNERYLRRIFNENILKELMGSGEVISYLEKEWDQLQKDREALRQIFPSGEN
KVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIEGVRDLLQKCVIVAGEDHLSKQANE
NATLLFQCLVRSTLCTKCVSEDMRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSL
GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAK
NVLCRLEHTTLRKVTANTAIYYDPDPQNTVIEEDQEFVTVYYEMPDFDPTRISPWLLRIE
LDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRLRIMNNDEKVTDEEENQ
DKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQNDSKKRIVITETGEFKAIAEWLL
ETDGTSLMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSVEKEMNQVLQFYGLYVNYR
HLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAELDPMRGVSE
NIIMGQLPRMGTDKCKAGIEIPMSIGHGMMSSVGMMFGNAVTPSMSPQMTPWNQGETPAY
VSAWSPHAGSGMTPGGPSFSPSGSSDASGLSPGYSPWSPQPGSPSSPGPSNSPYVPSPGG
GMSPSYSPSSPAFAPTSPSMTPTSSNYSPTSPSYSPSSPNYSPNSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSRTSPSYSPTSPSYSPSSPNYTPASPSFSPTSPSLYSSPRY
SPASPSYSPGSPKYSPTSPSYSPTSPSYASVSPQYTPTSPQYSPTSPTYSPTSPSYSPSS
PSHTPGASTRYSPTSPKYSPTSLSYSPASPQYSPSSSKYSPTSPTYTPTSPDYSASSPTY
SPTGPPSYSPTSPTYSPTSPEYDDR
NT seq
5658 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtccgattccaaagcccctcttcgttctgtgaagagggttcaatttggaata
ctttctccagatgaaatacgtcgcatgtcagttactgatggagggatcaaatatcctgaa
acatatgaaggtggtcgcccaaaaattgggggtcttatggatccccgtcaaggagtcgtt
gacagaatgtctcgatgtcagacttgtgcgggaaacatgacagagtgtccaggtcatttt
gggcacatagatttagcaaaaccagtctttcatgttggttttttaacaaaaactattaaa
atactacgttgtgtttgttttttttgctcaaaactattagttagtccgaataatgcaaaa
attaaagaaattgtgacgaaatctagaggtcaacctagaaaaagattaacttttgtatat
gatctttgtaaaggaaaaaatatatgtgaaggtggtgatgaaatggacattaccaaagat
aatgctgataatcctgataacagcaaagataaaaaaggtggtcatgggggttgtggaaga
tatcagcctaacattagaagaactggattagatctcactgctgaatggaaacacacaaat
gaagataatcaagaaaaaaaaattgcattaagtgctgaaagagtatgggaaatattaaaa
cacataacagatgaagagtgtttgattttgggtatggaccctaaatttgctaggccggat
tggatgctagtaactgttctgccagttcctccactgagtgtcagacctgctgttgttatg
tatggttcggctagaaatcaagacgatttaacacataagttagcagatattatcaaagca
aataatgaattaattcgtaatgaacaagccggtgctgccgcacatataatatctgaaaat
ataaaaatgttgcaatttcatgttgccacacttgtggacaatgacatgccaggaatgcca
agagcaatgcaaaagtcaggcaaacctcttaaagcattaaaagccagattaaagggtaaa
gaaggaagaattcgtggcaatttaatgggaaagcgtgttgacttttcagctcgaacagta
attacacctgatccaaatttgagaattgatcaggtaggagtaccaagatcgattgctcaa
aaccttacatttccagaaattataactccttttaatattgataaaatgcaagaactggtc
agaagaggaaattcacaatatcccggagcaaaatatattataagggataatggagaaaga
attgatttgagatttcatccaagacctagtgatttgcatcttcaatgtggatataaagtt
gaaaggcatattcgagatggagatttagtaatttttaatcgtcaacccacacttcacaaa
atgagtatgatgggtcacagagttaaagttttaccttggtcaacatttcgtatgaattta
agttgtacttctccttataatgctgatttcgatggtgatgaaatgaatcttcacgttcct
caatccatggaaacaagagcagaagtggaaaatcttcatgtcacgcccaggcaaattata
actcctcaagcaaataaaccggttatgggtatagtgcaagatacacttactgcagtcaga
aagatgacaaaaagagatgtttttttggaaaaagagcaaatgatgaatattttgatgttc
ttgcccatttgggatgggaaaatgccccaacctgctatacttaaaccgaaaccattgtgg
accggaaagcaagtattttcattgataattccgggtaatgtaaatatgatacgaacgcat
tccactcatcctgatgaagaagatgatggtccgtacaattgttgtggagcacggagaact
tattatgggaattttgtgcaaaagactttgggaacatccgccggctctttacttcacata
tgtatgctggaattaggacatgaagtttgtggccagttttacggaaatatccaaacagtt
attaataattggcttctattggaaggacactcaatcggtattggtgatacaatcgctgat
cctcaaacgtacttggaaatccagaaagctataaaaaaagctaaagaagacgtcatagaa
gtaattcaaaaagctcacaatatggaactggaacctactcctggtaatactttacggcaa
acttttgaaaatcaagtgaacagaattttgaacgatgctcgagacaaaactggaggttct
gccaaaaaatctttaactgagtacaacaatttaaaagccatggtggtgtcaggatccaaa
ggatcaaatattaacatttcgcaggttattgcttgtgttggtcagcaaaacgtagaaggg
aaacgaataccgttcggtttcaggaagagaactctaccacattttataaaagatgattat
ggtcccgaatctagaggttttgtagaaaattcgtatttggctggattgactccttcagag
tttttttttcacgccatgggaggtcgtgaaggtttaatcgatacagctgtaaaaactgct
gaaactggatatattcagcgtaggttaataaaagctatggaatctgttatggttcattat
gatggaactgttcgtaattctgtcggtcagctgattcagttacgatatggagaagacggt
ttatgtggtgaaactgtagaatttcagacattacctacaattaaattgtctaataaagcg
tttgaaaaacgtttccgctttgatgcgacgaacgaaagatatttaagaagaatatttaat
gaaaatatacttaaagagttaatgggttcgggagaagtgatatcataccttgaaaaagaa
tgggatcagttgcagaaagatcgtgaagctcttaggcaaatatttccgagtggtgaaaat
aaagtagtattgccctgtaacttgcaaagaatgatttggaatgtacaaaagattttccat
attaataagcgagctccaactgacttaagtcctctcagagtaattgaaggtgttcgagat
ttgctacaaaagtgcgttatagttgccggagaagatcatttaagtaagcaagccaatgaa
aatgccactcttttatttcaatgcctagttcggtctactttgtgtactaaatgtgtatct
gaagatatgagattatctaccgaagcctttgaatggttaattggagaaatcgaaactaga
ttccagcaggcacaatgcgctccgggagaaatggtaggagctttagctgctcaatcactt
ggtgaaccagccacacaaatgactttaaatactttccactttgctggggtttcttcgaaa
aacgtaacccttggtgtacctaggttaaaagaaataattaacatcagtaaaaagcctaaa
gctccctctttgactgttttccttactggtgcagccgctagagatgctgaaaaagcaaaa
aacgttttgtgccgtttagaacacactacattacgaaaagtaactgcaaacacggcaata
tactacgatcccgatccacaaaacactgtcattgaagaggatcaagaatttgttacagtt
tattacgagatgcctgattttgatcccacaagaatatcgccctggcttctaagaatagaa
cttgatagaaaaagaatgactgataaaaaattaacaatggaacaaattgcggaaaaaata
aatgctggttttggagatgatttaaattgtattttcaatgatgataatgctgaaaaatta
gtgcttagattaagaatcatgaataacgacgagaaggtcacagatgaagaagaaaatcaa
gataaaatggaagatgatatgtttttaaggtgcatagaagccaatatgttatctgatatg
actttgcagggaatcgaagcaattggcaaagtttatatgcacttgcctcaaaatgattca
aaaaaaagaattgtaataaccgaaacaggtgaattcaaggcaatcgcggaatggttgctt
gaaactgatggaacaagtttaatgaaagtccttagcgaaagagacgtggatccggttaga
acatattctaatgatatttgtgaaatattctccgtattgggtatagaagcagtacgaaaa
tctgtggaaaaagaaatgaatcaagttcttcagttttacgggctctacgtaaattatcgt
catcttgcacttttatgtgacgtcatgacagcaaagggtcacttgatggcaattactcgt
catggaattaatcgacaagatacaggagcattgatgaggtgttcctttgaagaaactgtt
gatgttcttatggatgcagcttcccacgctgaattagatcctatgagaggagtttcggaa
aatattatcatgggacaactacctcgaatgggaactgacaaatgtaaagcgggtattgaa
attcccatgtctattggtcacggtatgatgtcaagcgtaggaatgatgtttggaaatgct
gttacaccgtctatgagtcctcaaatgacaccttggaatcaaggagaaacccctgcatat
gtaagtgcttggtccccacatgcaggtagtggaatgacgccgggaggacctagtttttcg
ccgtctggttccagtgatgccagcgggctttcgcctggctacagtccgtggtctcctcaa
ccaggaagtccaagttcacctggtccatctaatagtccatacgtacctagtcctggcggg
ggcatgtctccaagctactctccatccagccccgcttttgcaccaacttctcctagtatg
actccgaccagttcaaattactctcctacatctccatcatattctccttcgtcacctaat
tattcgcctaattcaccgagttattcccctacatctccaagttattctcccacgtctcct
agctactctcccacatctcccagttattctccaacatctccaagttactctcctacttca
ccttcttattcgcctacatctcccagttattctcctacttcaccttcttattcgcctact
tctcccagttattctcccacttcgccttcttattctccaacatctccgagttattcccct
acgtctccatcgtattctccaacatccccgagttattcacctacatctccatcttattct
cgaacgtctcccagttattctccaacttcgcctagttactcaccaagctcgcctaactac
actcctgcaagtccaagcttttcacctacttcacctagtttatatagcagtcctagatat
tcacctgccagtcccagttactctccaggatcgccgaaatattctccaaccagtccaagt
tattctcctacttccccgagttatgcaagtgtttcgccacagtacactcctacttcacct
caatattcccccacatcgccaacatactctcctacaagtcctagttattcaccatcttct
ccgagtcacactccgggtgcttccaccagatattcgcccacttcacctaaatattcccct
acttccctttcttattctccagcaagtccccaatattctccttcaagttctaagtactct
cccacatcacctacttacactccaacttctccagattattcagccagttctccaacatac
tctcccacaggccctccgagttattcacctacttcacccacgtattctccgacatcacct
gaatatgatgatcgctaa
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integrated database retrieval system
