Pseudomonas hamedanensis: HU739_000290
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Entry
HU739_000290 CDS
T07661
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phv
Pseudomonas hamedanensis
Pathway
phv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HU739_000290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phv03400
]
HU739_000290 (mfd)
Enzymes [BR:
phv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HU739_000290 (mfd)
DNA repair and recombination proteins [BR:
phv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HU739_000290 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AAA_22
AroM
Motif
Other DBs
NCBI-ProteinID:
QXI17466
UniProt:
A0A9E6TG78
LinkDB
All DBs
Position
complement(62726..66175)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAEAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRARLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPETQRSIDKVESVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWRRVVASQQDVESGVGRERFPAHALPDL
AIEAKATQPLAALAGFLEQFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAG
KDRLAITIAPLDEGLVLDDPALALVAESPLFGQRVMQRRRREKRSDVSNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLTILEIDNQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDS
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQATIEAVREDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRITALKLQAEKLGIKKV
DGGPQGGRIEFEAQTPVDPMTLIKLIQTQPKRYKFEGATMFKFQVPMERPEERFNTVEAL
FERLIPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgttctgcgtctaccgctactccctgccgaggcaggtaaacagcattggggcaat
ctgcccggtgctgccctcagcctggcgattgccgaggctgccagcgctgccaagcgcttc
accctgctgctgaccgccgacagccaaagcgccgaacggctggaacaggagctgagtttc
ttcgccccggatttgcccgtgctgcatttccccgactgggaaaccctgccgtacgatttg
ttctcgccacaccaggacatcatttcccagcgcatcgccagcttatacaggctgccggaa
ttggcgcatggcgtactggtggtgccgattaccacggccctgcaccgactggcgccgacc
aaattcctgctcggcagcagcctggtgctggatatcggccagaagctcgatgtcgagcag
atgcgcgcgcggcttgaggccagcggctatcgctacgtcgacacagtttatgagcacggc
gaattcaccgtacgtggcgcgctgatcgacctgttcccgatgggcagcaaactgccctat
cgcatcgacctgttcgatgatgaaatcgaaaccctgcgcaccttcgatccggaaacccag
cgttcgatcgacaaggtcgaatcggtcaagctactgccggcccgcgagtttccgttgcag
aaagatgcagtcacccgcttcaaagcgcgcttccgtgagcgcttcgacgtggacttccgc
cgttgcccgatctttcaggacctgagcagtggtatcacaccggccggtatcgagtactat
ctgccgctgttcttcgacgaaacctcgacgctgttcgactacctgccgcaggacactcag
gtgttctcactgccgggcatcgagcaagcggcggagaatttctggaacgacgtgcgcaat
cggtatgaagagcgccgcgtcgatccttcgcgccctttattgccaccggccgaattgttc
ctgccggtggaagactgctttgcacggctgaagaactggcgacgggtagtggcgagtcag
caagacgttgagagcggtgtcggccgtgaacgcttcccggcgcatgcattgccggatctg
gcgatcgaagccaaagccacccaaccgctggcggcgctggcaggcttcctcgaacaattc
cccggacgcgtgctgttcaccgccgaatcggcgggtcgtcgcgaagtcctgctggaactg
ctcgaacgcctgaagctgcgtccaaaaaccgtcgatagctggccggatttcgtcgctggc
aaggatcgtctggcgatcaccatcgccccgctcgacgaaggtctggtgctcgacgacccg
gcactggcactggtcgcggaaagtccgctgttcggccaacgggtgatgcaacgacgtcgc
cgcgagaagcgcagcgacgtcagcaacgatgcagtgatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcacattgatcacggtgtcggtcgctatctgggcctgacgatt
ctggaaatcgacaatcaggccgccgaatttctcaccctcgaatacgccgagaacgccaag
ctctacgtgccggttgccaacctgcacctgatcgcccgttacaccggcagcgacgactcg
ctggcgccgctgcatcgtctcggctcggaaacctggcagaaagccaaacgcaaagccgcc
gaacaggtgcgcgacgtcgccgccgaactgctcgacatttacgcccgtcgcgccgcccgc
gaaggttacgcgttcgccgacccgaaagccgattacgccacgttcagcgccggtttcccg
ttcgaagaaaccccggaccagcaagcgaccatcgaagccgtgcgcgaagacatgctcgcg
ccgaaaccgatggatcgcctggtctgcggcgacgtcggcttcggcaagaccgaagtggcc
atgcgcgccgcgttcatcgcggtgcacggcggtcgtcaggtggcgattctggtgccgacc
accctgctcgcccagcagcactacaacagtttccgcgaccgcttcgccgactggccggtg
accgtagaggtgatgagccgcttcaagtccgccaaggaagtcaacgcggcgattgcagat
ctggcggaaggcaagatcgacattgtcatcggcacgcacaagctgctgtccgacgacgtg
aaaatcaaaaacctcggcctggtgatcatcgacgaagaacaccgctttggcgtgcgtcag
aaagaacagctcaaggcgctgcgcagcgaagtcgacattctcaccctgaccgcgacaccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccacccgcgcgacgcctgtcggtgcgcaccttcgtcatggagcagaacaagagcacggtc
aaagaggccctgctgcgcgagctgctgcgtggcggccaggtctactacttgcacaacgat
gtgaaaaccatcgagaaatgcgccgccgacctcgccgaactggtgccggaagcgcgcatt
ggtattggccacgggcagatgcgcgagcgcgacctcgaacaggtgatgagcgacttctat
cacaagcgtttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgaacgagccgacaagttcggtctggcacagctgcaccag
ttgcgtggccgcgtcggccgcagtcaccaccaggcttacgcctacctgctgacgccgccg
cgccagcaaatcacttcggacgcggaaaagcgtctggaagcgatcgccaacacccaggac
ctcggcgccggcttcgtgctggcgaccaacgacctggaaatccgcggcgctggcgaactg
ctcggcgacggtcagagcgggcagattcaggcggtgggcttcacgctgtacatggaaatg
ctcgaacgcgcggtgaagtcgattcgcaaaggcgagcagccgaacctcgatcagccgctt
ggcggtggtccggaagtcaacctgcgggtgccggcgctgattccggaagactatctgccg
gatgtgcatgcgcgcctgattctgtataaacgcatcgcctcagccaccgatgaagaaggt
ctgaaggatctgcaggtcgagatgatcgaccgcttcggcctgctgccggagccgaccaag
aacctggtgcggatcaccgcgttgaaactgcaggcggaaaagctcggcatcaagaaagtc
gatggcgggccgcagggcgggcgcatcgagttcgaagcccagacgccagtcgacccgatg
accctgatcaagctgatccagacgcagcccaaacgctacaaattcgaaggcgcgacgatg
tttaaattccaggtgccgatggagcgcccggaagaacgttttaatactgtagaggcgctg
tttgagcgtctcatcccgaaatccgcttga
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