Pseudomonas hygromyciniae: JTY93_12425
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Entry
JTY93_12425 CDS
T09404
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
phyg
Pseudomonas hygromyciniae
Pathway
phyg02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
phyg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JTY93_12425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyg03021
]
JTY93_12425
Transcription machinery [BR:
phyg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JTY93_12425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Sigma70_ECF
GerE
HTH_24
DUF3885
HTH_IclR
HTH_28
HTH_36
HTH_11
HTH_40
TnsD
PCI
Spo0A_C
Motif
Other DBs
NCBI-ProteinID:
QSB42070
LinkDB
All DBs
Position
complement(2815623..2816168)
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AA seq
181 aa
AA seq
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MHPVIARRLFVSSPSIPSAPHAEIRTLYIDHHAWLLDWLRKRLRHGDNAADLAHDTFVHI
LGKPERLQELRQPRAWLSTVAHGLLVDRVRRQRVERAYLQAIAHLPEAGVPSPESQLILL
ETLMRIDALLDGLRPKVRMAFLMSRLEGLSYKAIAERLAISLSSVEKYMATAIRHCYLAQ
R
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgcacccagttatcgcgcggaggcttttcgtgtcgtcgccatccattccttcagcccct
cacgccgaaatccgcacgctgtacatcgatcatcacgcgtggttgctggactggttgcgc
aagcggctgcgccatggcgacaacgccgcggacctggctcacgacacctttgtgcacatc
ctcggcaagccggagcggttgcaggagttgcgtcagccacgggcctggttgagtacggtg
gctcacgggctactggtagatcgcgtgcggcgccagcgagtcgaacgggcttacctgcaa
gccattgcccacctcccggaagctggggtgccgtcaccggagtcgcagttgatcctgttg
gaaaccctgatgcgcatcgacgcattgctcgatggcctacggcccaaggtgcgcatggct
ttcctgatgtcgcggcttgaaggtctcagttacaaggcgatcgccgaacgcctggccatc
agtctcagctcggtggagaagtacatggccactgccattcgccactgctacctggcgcaa
cgatga
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integrated database retrieval system
