Pseudomonas hygromyciniae: JTY93_18090
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Entry
JTY93_18090 CDS
T09404
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phyg
Pseudomonas hygromyciniae
Pathway
phyg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JTY93_18090 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phyg03400
]
JTY93_18090 (mfd)
Enzymes [BR:
phyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JTY93_18090 (mfd)
DNA repair and recombination proteins [BR:
phyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JTY93_18090 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
QSB38179
LinkDB
All DBs
Position
4069816..4073265
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAEAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVQSIKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVEAGVGRARFPAQTLPNL
AIEAKATQPLQALSDFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAG
KDRLAITIAPLDEGLQLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNNSTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
LERLTPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgtcctgcgtctaccgctactccctgccgaggcaggtaaacagcattggggcaat
ttgcccggtgccgccctgagcctggccattgccgaggctgccagtgcagccaaacgcttt
accctgctgctgaccgccgacagccaaagtgccgaacggctggagcaggagctgagcttc
ttcgcccccgatttaccggtgctgcacttcccggactgggagaccctgccctacgacttg
ttttcgccacaccaggacatcatttcccagcgcatcgccagcctgtaccgcttgccggaa
ctggcccacggcgtgctggtggtaccgatcaccacggccctgcaccgcctggcgccgacc
aagttcctgctgggcagcagcctggtgttggatatcggccagaagctcgatgtagagcaa
atgcgcacccgcctggaagccagcggctaccgctgcgtcgatacggtgtacgagcatgga
gagttcgccgtgcgcggcgcgctgatcgacctgttcccgatgggcagcaaactaccctac
cgcatcgacctgttcgacgacgaaatcgagaccctgcgcaccttcgacccggaaaaccag
cgttccatcgacaaggtgcaatcgatcaagctgctgccggcccgggaattccccctgcaa
aaagacgcggtcacacgcttcaaggcgcgctttcgcgaacgctttgacgtggacttccgc
cgctgcccgattttccaggacctgagcagcgggattacccccgccggtatcgagtactac
ctgccattgttcttcgacgaaacctcgaccctgttcgattacctgccccaggacacccag
gtgttctcgctgcccggtatcgaacaggcggcggaaaatttctggaacgacgtacgcaac
cgttacgaagagcgccgtgtcgatccctcccggcctttattgccgcctgccgagctgttc
ttgccggtggaagactgctttgcccgcctgaagaactggccgcgcgtggtcgccagccag
caggatgtagaagccggtgtcggtcgcgcacgcttcccggcccaaaccctgccgaacctg
gccatcgaagccaaggccacccagccgctccaagcactgtccgacttccttggcgatttc
ccgggccgcgtgctgttcaccgccgaatccgctgggcgccgcgaagtgctgctggagttg
ctggaacgcctgaagctgcggccaaaaaccgtcgacagctggccggactttgtggccggc
aaggaccgcctggcgatcaccattgcgcctctcgatgaaggcctgcaactggatgatccg
gccctggcactgattgccgagagcccgctgttcggccaacgcgtgatgcagcgccggcgc
cgtgaaaaacgtgcggacgccaacaacgacgcggtgatcaagaacctcaccgaactgcgc
gaaggcgcaccggtggtgcatatcgaccacggtgtggggcgctatctgggcctgcagacc
ctggagatcgacaaccaggccgccgaattcctcaccatggaatacgcagagggcgccaag
ctctacgtcccggtggccaacctgcacctgatcgcacgctacaccggcagcgacgacgcc
ctcgcgccgctgcatcgcctgggctccgagacctggcagaaagccaagcgcaaggccgcc
gaacaggtgcgcgacgtggccgccgaactgctggacatctatgcccgccgcgcggcccgc
gaaggttatgcgttcgccgacccgaaggccgactacgccaccttcagcgccggcttcgcc
ttcgaagaaaccccggaccagcaaaccaccatcgacgccgtgcgcgccgacatgctcgca
ccaaagcccatggaccgtctggtctgcggcgatgtgggcttcggcaagaccgaagtggcg
atgcgcgccgcatttatcgcggtgcatggaggccgccaggtggcgatcctggtaccgacc
accctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgattggccggtg
accgtggaagtaatgagccgcttcaagtcggccaaggaagtgaatgccgctgtcgccgat
ctggccgaaggcaagatcgatatcgtcatcggcacccacaaactgctgtcggacgacgtg
aagatcaagaacctgggcctggtgatcatcgacgaagagcaccgctttggcgtgcgccag
aaggagcagctcaaggccctgcgcagcgaggtcgatatcctgaccctgaccgcgacgcca
atcccacgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcgcgacgcttgtcggtgcgcaccttcgtcatggagcagaacaacagcacgatc
aaggaagccctgctgcgtgagttgctgcgcggcggccaggtctactacctgcacaatgat
gtgaaaaccatcgagaaatgtgccgccgacctcgccgaactggtgccggaagcgcggatc
ggcatcggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccattatcgagaccggcatcgacgtgccg
agcgccaataccatcatcatcgagcgtgccgacaaattcggcctggcgcagttgcaccaa
ctgcgtggccgggtcgggcgcagtcaccaccaggcctacgcctacctgctgacgccaccg
cgccagcagattaccggtgatgctgaaaagcgcctggaagccatcgccaacacccaggac
ctgggcgccggatttgtactggccaccaacgatctggaaatccgtggcgccggcgaattg
ctgggcgacggccagagcgggcagatccaggccgtgggcttcaccctttatatggaaatg
ctggagcgagcggtcaaggccatccgcaaaggcgagcaacctaatctcgatcaacccctg
ggcggcggcccggaaatcaacctgcgtttgccggcgttgattcccgaggactacctgccg
gatgtgcatgcacggctgatcctgtacaagcgcatcgcctcggccaccgacgaagaaggt
ctcaaggacctgcaagtagaaatgatcgaccgcttcggtctgctgccggaaccgaccaaa
aacctggtgcgcctgaccctgctcaagttgcaggccgagcaactggggatcaagaaggtc
gacgcgggcccccagggcgggcgtatcgagttcgaagcgcagacaccggtggacccgttg
gtattgatcaagttgatccagggccaacccaaccgctacaaattcgaaggcgccacactg
ttcaaattcatggtgccgatggaacgtgcagaagagcgctttaatacattggaggcgctg
cttgaacgcctcaccccaaaatctgcttga
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