Phyllobacterium sp. 628: HB779_21000
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Entry
HB779_21000 CDS
T08362
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
phyl
Phyllobacterium sp. 628
Pathway
phyl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
phyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HB779_21000 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phyl03400
]
HB779_21000 (ligD)
Enzymes [BR:
phyl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HB779_21000 (ligD)
DNA repair and recombination proteins [BR:
phyl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HB779_21000 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QND54403
UniProt:
A0A7G6SIS1
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All DBs
Position
p_2:85850..88396
Genome browser
AA seq
848 aa
AA seq
DB search
MAVLETYHQKRDFSKTREPKGSKGKKAGNSFVIQKHDATRLHYDLRLEMDGVMKSWAVTR
GPSLVPAEKRLAVHVEDHPIEYNAFEGTIPKGEYGGGTVIIWDRGYWTPVDDAAKGYQKG
HLEFELHGEKLHGRWHLVRMQRKPREKRENWLLIKSEDDAARDASDPDILEERPESVKTG
RVIDEVAGEEPGWSSKTGKISGKKRHLKSPKTPASKTEQVELDPSELKGSKKGALPRFIE
PTLATLSQKPPAGAEWIHEVKFDGYRLQAHIHAGKIKLFTRTGLDWTAKFGKELVSAFQA
LPIGNGLIDGELVVENASGASDFSALQAALSNDDSSCFRFYAFDLLYLDGYDLRAAPLIE
RKSLLQQVVGSDEGLIKYSGHFEEDGKLVLSHSCRLGLEGIVSKQRDAPYRSGRVKTWIK
SKCSSRQEFVIAAYTPSSASRKAIGSLVLGVYAKGKLEHVGRVGTGFTAQSAGELFHKLS
GLRIQESPFAEKLSAIESRNIRYIRPELVAEVEFRGWTADGSLRHASFRGLREDKVATDV
IRETRKMSATPKQPKRTVQLTHPDRIYWPDAGVTKEGLADYYTEAWRYIEPFIAGRPLAL
LRGPSGIDGQLFFQKHAWKGLNANIDLIKDPKDKAGEPLISINDLDGLMALVQSAVLEIH
PWGSTLKDWEHPDMIIMDLDPGPDVGWQTVIDAALETRDRLKQFGLKSFVKTSGGKGLHV
VAPLQPKATWPTVKAFTKAIADAMAADDPDHYVATVTKSKRQGKILIDYLRNQRGSTAVA
PYSTRARAGAPVSMPLGWDELDLSIGPAYFTVGNAMTRIDALASNPWEDFHKAAKPLPAA
KPGRKPSS
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggccgtattggagacataccatcagaagcgcgatttttcgaaaacgcgtgaacccaag
ggctcgaaaggcaagaaggccggaaacagtttcgtcatccagaaacacgatgctacgcgc
ctgcactatgatctgcggctggagatggacggtgtgatgaaaagctgggctgttacacgc
ggcccaagtcttgtgccagctgaaaaacgtttagccgttcacgtggaagatcatccgatt
gaatacaatgcgttcgaggggaccattcccaagggcgaatatggtggcggcactgtcatc
atttgggatcgcggttattggacgcctgttgatgacgcggccaagggatatcaaaagggt
catctcgaattcgagctgcatggtgagaagctgcatggccgctggcatcttgtgcgcatg
cagcgcaagccacgggaaaagcgtgagaattggctgcttatcaaatccgaagacgatgcg
gcacgggacgcaagcgatcctgatatactggaagaacggccggaatctgtcaaaacgggc
cgtgtaatcgatgaagtcgcgggcgaagagccgggatggtcgtcaaaaactgggaagatt
agcggaaaaaagcggcaccttaagtcgccgaagacaccggcatcaaagactgagcaggtc
gaactcgatccttccgagttgaaagggtccaaaaagggagcgctgccgcgcttcattgag
ccaacccttgccacgctgtcacaaaagccacccgcaggcgcagaatggattcacgaggtc
aagtttgatggctacagactgcaggcgcatatccatgcggggaagatcaagcttttcacc
cggactggcttggactggacggcaaaattcggcaaggaattggtttccgcatttcaggcg
ctgcctattggcaatgggctcatcgatggcgagctcgttgtcgaaaacgcctccggcgca
tcagacttttccgctctgcaggcagcgctgagcaatgatgacagcagctgtttccgtttc
tatgccttcgatctgctttacctcgatggctacgacttgagagctgcaccattgatcgaa
cgaaaatcgctcttgcagcaggttgtcggatcggacgaaggcttgatcaaatacagcggt
catttcgaagaggatggcaaacttgtcctgtcccattcatgccgccttggtctggaaggc
atcgtatccaaacagcgcgatgctccctaccggtcgggacgcgtgaagacatggataaaa
tccaaatgctcgtcgcggcaggaatttgtcattgccgcatacacgccgtcatcggcatca
cgcaaggcaatcggctcactggtccttggcgtctacgcaaaaggcaagcttgaacatgtg
ggtcgtgtcggcaccggttttactgcacaatcggcgggagagctgtttcataaactcagc
gggctgcgcattcaggaaagtccctttgctgaaaagctgagtgcgatcgagagcaggaat
atccgttacatcaggccggagcttgtagctgaagttgagtttcgcgggtggacggccgac
ggaagcctgcgtcacgcttcgtttcgcggattacgggaagacaaggtagcaacggacgtc
atcagggaaacgcgcaaaatgtctgccacacccaaacaaccgaaacggacagtccaactc
acgcatcccgaccgtatttattggccggatgcgggtgtcaccaaggagggactggctgat
tattacacggaggcctggcggtacatcgaacctttcattgcaggcaggccgctggcgctt
ttgcgcggtccgtccggcatcgacggacagctgtttttccagaagcatgcatggaaaggc
ctgaatgccaatatcgatctgatcaaggatccaaaggacaaggcgggcgagccgcttatc
agcatcaatgatctggatgggctcatggctctggttcaatccgccgtgctggaaatccat
ccatgggggtcaacactcaaggattgggaacacccggatatgatcatcatggatctggat
ccgggtccagatgtcggctggcagactgtcattgacgctgcattggaaacccgtgacagg
ctcaagcagtttggcctcaaatcctttgttaaaacatcaggtggaaaaggactgcatgtg
gttgcgccgctccagccgaaagccacatggccaaccgtcaaagccttcaccaaagccatc
gccgatgccatggctgccgatgatcctgaccactatgttgcaacggtgacgaaatcaaaa
cggcaggggaaaattctgattgattatctgcgcaaccaaagaggttcgaccgctgtcgcg
ccctattcgacgcgggcacgtgcaggtgcacctgtttccatgccgcttggttgggatgaa
ctcgatctttccatcggaccagcctatttcactgtcggtaacgcgatgacgcgcatcgac
gcattggccagcaatccgtgggaggatttccacaaagcggcgaagccactgccagcggca
aagcccggccgcaagccaagctcatag
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