Pangasianodon hypophthalmus (striped catfish): 113528927
Help
Entry
113528927 CDS
T05759
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03013
Nucleocytoplasmic transport
phyp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113528927 (upf3b)
03015 mRNA surveillance pathway
113528927 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113528927 (upf3b)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113528927 (upf3b)
mRNA cycle factors
P-body specific factors
113528927 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
113528927
NCBI-ProteinID:
XP_026773581
LinkDB
All DBs
Position
Unknown
AA seq
465 aa
AA seq
DB search
MKEDKENTRPKERKVEIKCEENEKTEKPNKEKKEAMTKIVIRRLPPSLTKEELEEQLQPL
PDVDYLEFFSSDTSLYPHLFARAYLNFKNQEDIVLFRDRFDGYVFIDNRGQEYPAIVEFA
PFQKIAKKRSKKKDSKSGTIEEDSDYKKFLEIYNGDEEKFTSTTETLLEEIEAKTKELVA
KKTTPLLDFLKNKQRLREEKKEERRRRELERKRLRDEERRKWREEDRRKRKEAEKLKKAE
NAPGKDKDQPKEEQPKIKLLKKLEKQENSDNEKPKEKPKKPEREKLKDDRGPGGADGKKR
QNGEHREDKPRKYEEDGRREHRDREVDRERDRERDRERRQKEKERIKRQDEERRKRRERH
DGENAYKKREEESKKEKEYVWEKRKNENSGESTGHSQADKSEKSSKDAKKEENVKKDRLR
NKDRPAIQLYQPGARSRNRGATGDGQAGDKKAERDAKNTQEKGEE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagacaaggaaaatacgcggcccaaagagaggaaagtggagattaaatgtgaa
gaaaatgaaaaaaccgagaagccaaataaagagaagaaggaggccatgacaaagattgtg
atccgacgcctccctccgagtctgactaaagaggagctggaggagcagttacagcctctg
ccagacgtggattatctcgagttcttctccagtgacacgagcctctaccctcatctcttt
gcaagagcatatctaaatttcaagaaccaggaggacattgttcttttcagagaccgcttt
gatggttatgtgttcattgataatcgaggacaagaataccctgcaattgttgagtttgca
ccattccagaagattgctaaaaagaggagcaagaaaaaggattccaaaagtggaacaatt
gaagaagatagtgattataagaagtttttggagatctacaatggtgacgaagaaaagttt
acttcaaccactgagacattattagaagaaatagaggccaagacaaaggaactagttgcc
aagaagacaactcctctcttggacttccttaagaataagcagagattaagagaggaaaag
aaagaggagaggaggaggagagaactggagcgcaaacggttgcgtgatgaagagcggcgg
aagtggagagaggaggaccgaaggaaacgcaaagaagctgagaaattaaagaaagcagaa
aatgcacctggaaaggacaaggaccaacctaaagaggagcagccaaaaatcaagcttctg
aagaaactagaaaagcaagagaatagtgacaatgaaaagccaaaagagaaacccaagaag
ccagagcgagagaaactgaaggatgaccgaggtccagggggagcagatggaaaaaaacgt
caaaatggtgaacaccgagaggacaagccaagaaaatatgaggaagatggacgcagggag
catcgggatcgtgaagtggacagagagagagaccgtgaacgggatcgggagcgacggcag
aaagagaaggagcgaatcaagaggcaggacgaggagcggcgaaagaggagggagcgtcac
gatggagaaaacgcctacaaaaagagagaggaagagagcaaaaaggaaaaggagtatgta
tgggaaaagagaaagaatgagaattctggcgaatcaacaggccacagtcaagcggacaaa
tctgagaagtcttctaaagatgctaaaaaggaagaaaatgtgaaaaaggatcgtttaagg
aacaaggatcgccctgccattcagctgtaccagccaggagcaaggagccgcaacagagga
gctacaggagatggccaggctggggataagaaggctgagagggatgccaaaaatacacaa
gagaaaggggaagagtga
DBGET
integrated database retrieval system
