Pangasianodon hypophthalmus (striped catfish): 113533264
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Entry
113533264 CDS
T05759
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03013
Nucleocytoplasmic transport
phyp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113533264 (upf1)
03015 mRNA surveillance pathway
113533264 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113533264 (upf1)
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113533264 (upf1)
5.6.2.5 RNA 5'-3' helicase
113533264 (upf1)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113533264 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
113533264 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
YusW
AAA_22
AAA
Motif
Other DBs
NCBI-GeneID:
113533264
NCBI-ProteinID:
XP_026781069
LinkDB
All DBs
Position
Unknown
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PEGVLQNGDDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSNTGRPSSMYFQTHDQIGMIGAGPNPMASMN
IPIPFNLVMPPLPPPGYLGQINGPATGRGASKGKPSGRGGRQRNRGVGNHGSGQTNMANS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagaggcgtacgggccgagctcgcagactctcaccttcctggacacggaggaa
gcggagctgctcggagccgacacgcagggctcggagttcgagttcaccgacttcaccctg
ccgagccagactcaaacacaaggccaaacccagagtcagctcgacaaccaggtgaatgga
cctgagggagttctgcagaacggcgatgatgctgtggtgaaaaccagtcaacttctggca
gagctgaatttcgaagaggatgaagaggacacctattacaccaaggatctccctgtgcat
gcctgcagttactgtggtattcatgatcctgcctgtgtggtgtattgcaacaccagcaag
aagtggttctgcaatggacgtggcaacacctctggcagccatattgtcaaccatttggtg
cgtgccaaatgtaaggaggtgaccctgcataaagatggtcctttgggggaaacagtgttg
gagtgttacaactgtggctgtcgcaatgttttcctcctgggcttcattccagccaaggcc
gattctgtcgtggtgctcctgtgcaggcagccatgtgccagtcaaagcagtctgaaggac
attaactgggacagctcccagtggcagcctttgatccaggaccggtgctttctgtcctgg
ctggtgaagatcccgtctgagcaggagcagctcagggcacgccagatcaccgctcagcag
atcaacaaactggaggagctctggaaggagaatccaacagcaacacttgaggatttggag
aagcctggtgtggatgaagagcctcagcatgttctgctgcgatatgaagatgcctaccag
tatcagaacatctttggcccattggtcaaactggaggcagactatgacaagaagcttaaa
gagtcccagacccaagacaatataactgtcaggtgggatttgggactgaataaaaagagg
attgcttatttcacccttcccaagacggattcaggtgacatgcgtcttatgcaaggggat
gagatctgcctgcgttataagggagatttggctcctctctggaaggggattggacatgtc
atcaaggtccctgataactatggagatgagattgctatagagctgaggagcagtgctgga
gctcccgtggaggtgccccacaacttccaggtggactttgtctggaaatccacttccttt
gaccgcatgcagagtgccctgaaaacatttgcggtagacgagacctcagtgtctggttac
atctatcacaagttgcttggccatgaggtggaggatgtgatcattaagtgccagttaccc
aagcgcttcactgcccagggcctgcctgacctcaaccactcacaggtgtatgctgtgaaa
acggtgctccagcgtcccctcagtctgatccaggggcctcctggtactggcaaaactgtt
acctcagcaactattgtttaccatctggctagacagggcaacgggccggtgctggtatgt
gctcccagcaacattgcagtggaccagctgacagagaaaattcaccaaacaggactgaaa
gtggtgcgtctctgtgccaagagccgagaggccattgattctcctgtgtccttcctggct
ctgcacaaccagattcgcaacatggacagcatgccagaactgcaaaagctgcagcagctg
aaggatgaaacaggagagctgtcttcctcggatgagaagcgctacagggccctgaagcgc
actgcagaaagggagctactcatgaatgcagatgtgatctgttgtacttgcgtgggtgcg
ggtgatcctcgtctggctaaaatgcagttccgctccatcctgatagatgagagtacccag
gctactgagccagagtgcatggtgcctgtagtgctgggagccaagcagctgatcctggtg
ggtgatcactgccagctaggtccagtggtcatgtgtaaaaaggctgctaaggcaggtctg
tcccagtctcttttcgagagactggtggtgctgggcatcagacccatccgtctacaagtg
caataccgtatgcaccctgcactcagcgctttcccctccaatatcttctatgaaggatct
ctccagaacggagtcactgctgctgaccgcatcaagaagggctttgatttccagtggcct
cagccagataagcccatgttcttctatgtgacacagggccaggaggagattgccagctca
ggcacctcctacctcaacaggactgaggctgctaatgtggagaagatcaccactcgcctt
ttgaaggccggagccaaacctgaccagattggtataatcactccctacgagggccagcgc
tcctacctggtgcagtacatgcagttcagcggttcccttcatactaagctctaccaggag
gtggagatagccagcgtggatgccttccagggccgtgagaaggacttcattattctgtct
tgtgtcagagccaatgagcaccaaggcatcggctttcttaatgatccacgcaggttgaac
gttgccctcaccagagccaggtatggtgtgatcattgtggggaatcctaaagctctgtct
aagcagccactctggaaccacctgctgaactactacaaggagcagaaggttctggtggag
gggcctctcaacaacctgagagagagcctcatgcagttcagcaaacctcgcaagctcgtt
aacaccatcaaccctggagctcgttttatgagcactgccatgtatgatgccagggaggcc
atgatccccggctcagtgtatgaccgcagcaacactggtcgtccatcgagcatgtatttc
caaactcacgaccagattgggatgattggtgcagggccgaaccctatggcctccatgaac
attcccatacccttcaacctggtcatgccccccctgcccccaccaggctacctgggccag
attaatggcccggctactggtcgtggtgcgtcaaagggaaagccaagtgggcgcggagga
cggcagaggaatcgtggcgtgggtaaccatggcagcgggcagaccaacatggcaaacagc
caggccagtcaggatctggtatctcagcccttctctcagggtcccctgacccagggctac
attaccatgagccagccctcacagatgagccagccaggcctgtcccagcctgaactttcc
caggacagttacctgggtgatgagttcaagtcgcagatggatgtggctctgtcccaggat
tccacttaccagggtgaacgggcataccagcatggaggagtgaccggactctctcagtac
tag
DBGET
integrated database retrieval system
