Pangasianodon hypophthalmus (striped catfish): 113533395
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Entry
113533395 CDS
T05759
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03030
DNA replication
phyp03410
Base excision repair
phyp03420
Nucleotide excision repair
phyp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113533395 (lig1)
03410 Base excision repair
113533395 (lig1)
03420 Nucleotide excision repair
113533395 (lig1)
03430 Mismatch repair
113533395 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phyp03032
]
113533395 (lig1)
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113533395 (lig1)
Enzymes [BR:
phyp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
113533395 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
113533395 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
113533395 (lig1)
DNA replication proteins [BR:
phyp03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
113533395 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
113533395 (lig1)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
113533395 (lig1)
NER (nucleotide excision repair)
Other NER factors
113533395 (lig1)
MMR (mismatch excision repair)
Other MMR factors
113533395 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DUF3371
Motif
Other DBs
NCBI-GeneID:
113533395
NCBI-ProteinID:
XP_026781330
LinkDB
All DBs
Position
Unknown
AA seq
983 aa
AA seq
DB search
MQRSISSFFQPMKCKEKDGMPKGKSESVKSPLKPQNIDQECDSPVKTSKRNRAIIDSDDE
EQQMVKEEAFQQNGKQTATPGCEKVGLVKDTASPLSPKPLVTPTSPTVSVASGTPETPVT
PNSTSPSFIPKRKTARKQFPKRKLDGRSDEEREKEEEGKETEGGQESKRARIEGSPEKMG
IDEEAMEVEQNNRNTVEKELLKAKDQGNMNVTNAEKENKKQSDEKETEQEGEKYEVNGNN
KGMKKVTKEEKCSPERVMKKLKDVEEEKIEGSAKKKAINSFFAPRKAAMKLEKSEEKSNV
EKKDGEKPAAATTSEEKEKKCEKDVEPANQSQYDPSKAHYHPIDDACWRKRQRVPYLAVA
RTFEKIEEDSGRLRNIETLSNFLRSVILLSPDDLLCCVYLCLNQLGPAYQGLELGVGETV
LMKAVAQATGRQLDKIKTEAQEKGDLGLVAESSRSNQRMMFAPANLSAVGVFSKLKEIGN
MSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLAALSQAVCLSPPG
QEFPPAVIDAGKGMSADSRRAWLEEKGLILKQTYCEMPNYDVIIPVMLRLGIDELPNHCK
LTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILESGEVRIFSRNQED
NTSKYPDIISRIPQIKKESVLSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKV
QVCVYAFDLLYLNGESLVREPLSKRRALLRKSFMEKEGEFVFARSLDSNNTETIAEFLEQ
SIRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGAYLGKGKRAG
SYGGFLLGCYDEENEEFQAVCKIGTGFKDEDLEQHYNFLKEHILPKPRPYYRVDQSAEPD
VWLDAVQVWEVKCADLSLSPVYKAAMGLVDPDKGISLRFPRFLRIRDDKKPEDATTGAQI
ADLYRKQQQIQNQGEKDDLEDYY
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatatcgtccttctttcagccaatgaagtgtaaggagaaggatggcatg
cccaaagggaaatctgagtcagttaaaagccccctcaaacctcagaatattgatcaggaa
tgtgattcaccagtgaagacaagtaagcggaaccgagcaatcatagacagtgatgatgaa
gagcagcagatggtaaaagaagaggctttccagcaaaatggaaaacaaacagccacacca
ggctgtgagaaggttggccttgttaaggatacggccagtccactctcaccaaagcccctt
gttaccccgacaagtcctactgtttcggtagcttctggcactcctgaaacgcctgttacc
ccgaattccacttcaccctccttcattccaaaacgcaagactgcccgtaaacagtttccc
aagaggaaattggacggcaggagtgatgaagagcgagaaaaagaggaggaaggaaaagag
acagagggaggacaggagagtaaacgagcaagaatagaaggatctcctgaaaagatggga
attgatgaagaggctatggaggtggagcaaaataacagaaatactgtggagaaagaacta
ctgaaagcaaaggatcagggaaacatgaatgtgactaatgctgaaaaagagaataaaaaa
caaagtgatgaaaaggaaactgaacaggaaggagagaagtatgaagtgaatgggaacaat
aaaggaatgaaaaaggtaacgaaggaggaaaaatgcagtcctgaaagagtgatgaagaaa
ttgaaggatgtagaagaggagaagatagagggatctgctaagaaaaaagccatcaacagt
ttttttgcacccagaaaagctgcaatgaagctggaaaaatcagaagagaaaagtaatgta
gagaagaaggatggcgagaagcctgcggctgctactacttctgaggagaaagaaaagaag
tgtgagaaggatgtagaacctgcaaaccagagccaatatgatccttctaaagctcactac
catcccattgatgatgcttgctggaggaagaggcagagagttccatatctggctgttgcg
cgaacctttgagaagattgaggaagattcgggcaggttgagaaacattgagactctgtcc
aactttctgcgatctgttatcctactctctccagatgacctcttgtgctgtgtgtacctg
tgtctgaatcagcttggccccgcctaccaggggctagagctaggtgtaggggaaacagta
ctgatgaaagctgttgcccaggcgactgggcgtcaactggacaaaatcaagacagaggcc
caggaaaaaggtgacctgggattggtagcggagagttcccgtagcaaccagagaatgatg
tttgcaccagcgaatctgagtgcagtgggcgtgttcagcaaactgaaggagattggcaat
atgagcggaaactctgcaatgaataagaaaattgacatcattaagggtctgtttgtggct
tgtcgtttctctgaggccagatacattgtgaggtcactggcaggcaaactgaggattgga
ttggctgagcagagtgttttagcagctctgagtcaagcagtatgtctgagtccaccaggt
caagaattcccgccagctgtgattgatgcaggaaaggggatgagtgcagacagcaggaga
gcatggcttgaggaaaaaggactcatccttaagcagacttactgtgaaatgccaaattat
gatgtcatcatccctgtcatgttgaggttgggcatagatgaactgcctaatcactgcaaa
cttactccaggtgtgccactgcgccccatgctggcccacccaactaagggagtaggggag
gtgatgaaaaggtttgatgaggctgctttcacctgcgaatacaagtatgatggagagaga
gcacagattcacattcttgagagtggtgaggttcgtatcttcagccgaaaccaagaggac
aacaccagcaaataccctgacatcatttcacggatcccacagataaagaaggaatctgtg
cttagctgtgtgttggactcagaggcggttgcatgggacagagagaaaaagcagattcag
ccctttcaagttcttaccacacgcaaaaggaaggatgtggatgcatctgagattaaggtg
caggtttgtgtgtatgccttcgacctgctgtacttaaatggagagtctctagtacgggag
ccattgagcaagcgtcgagctttgttaaggaagagtttcatggagaaggagggagagttt
gtcttcgctcgttctctcgactctaataacactgaaactatagcagagttcctggagcag
tccatacgagactcttgcgaaggcttgatggtgaagaccctggagaaagatgccacttac
gaaattgccaaacgctctcataactggcttaagctgaagaaggactatttggaaggtgtg
ggggatacagtggatctgtgtgtgattggtgcatatctagggaagggcaagagagccggt
agctatgggggtttcctgcttggttgctatgatgaagagaatgaggagtttcaggctgtc
tgtaagataggaacaggcttcaaagatgaagatctggagcagcattacaatttcttaaag
gaacacatccttcctaagccccgcccctactacagagtggatcaatctgcagagccagat
gtttggctggatgctgtacaagtgtgggaagtgaaatgtgctgatctgtcactgtctccg
gtgtacaaagcagcaatgggattggtggacccagacaaagggatttcccttcgctttcct
cgattccttcgcatcagagatgacaagaaaccagaggatgctactacaggagcgcagatt
gctgatctctacagaaagcagcagcagattcagaatcaaggagaaaaggatgatctagag
gattactactga
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integrated database retrieval system
