Pangasianodon hypophthalmus (striped catfish): 113537759
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Entry
113537759 CDS
T05759
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
113537759 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113537759 (lig4)
Enzymes [BR:
phyp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
113537759 (lig4)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
113537759 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
BRCT
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
113537759
NCBI-ProteinID:
XP_026788197
LinkDB
All DBs
Position
Unknown
AA seq
918 aa
AA seq
DB search
MDGSSKGKTAEETSKSDAASKTSVAAQVPFLDLCTVLENIQKAKHRPDKSKCLKDFIDSW
RRFHAALHKDNPDTTDSFYPAMRLIVPPFERERMAYGIKENMLAKLYIEVLGLPKSGPEA
NKLLNYRAPTTSKGDSGDFALTAYFVLKKRCTSRGNLSIKEVNDFLDSVAMNNASKQKDL
VKKSLLHLITQSSALEQKWLIRMILKDMKLGISKETVLQVFHSDAPELYNVTTALDRVCR
QLHDPSISLNEVSIGLFSAFKPMLAAIANIRQVEKQMGNQPFYIETKLDGERIQLHKDGD
VYKYYSRNSFEYTQQFGASPLEGSLTPFIHNVFKSHVVNCILDGEMMAYNPTTETFMQKG
SKFDIKRLVEDSDLQTCFCVFDVLLVNDQKFGNEPLKKRYDTLQTVFTPVKGRIQLVQYT
EAKTRQEVINALNEAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLI
VGGYWGKGRRSGMLSHFLCAVAETPSPGEKPTVFHTLCRIGSGYTMKELYELGLKLAEHW
KVYRKSSPPAGILCGTEKPEVYIEPRNSVIIQVKAAEIVTSDMYKTNCTLRFPRIERIRE
DKEWYECMTLDEISQFRDKASGKLASRHLHLQEDEPEKKKRKLASKPKKTIGIVDHFKSQ
DLSTVTKETDMFEDVEFCVMSGSNTHSKAELEKAVARGGGIVVQNPGKDTYCVIAGVENV
RVKNLIGSNQHDVVWASWLLECLDRKQVLPWQPRHMIHMSPSTREHFAEEYDCYGDSYYV
DTDEQQLRDVFSRMEPVEVDAVSIASIEQKYGFDDLPTSMFRPYRAYFDRCADLGNPESL
IKGTCLNFRALEFRFHGGTVVERLEEGITHVVMAGEERLLDIRTHRRLFTKKFKIVRETW
VTDSIKAGHVLNDNDYLV
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggacggctcatccaaaggcaagacagcagaggaaacatccaaaagtgacgctgcatct
aaaacatctgtggctgcgcaagtgccatttcttgacctgtgcactgttctcgagaatatc
cagaaagccaaacatcggccagacaagtccaaatgcttaaaggatttcatagattcatgg
agaaggtttcatgcagctcttcacaaagataatcccgacactacagattcattttaccca
gccatgcgtcttatcgtgcctccttttgaaagggagagaatggcctatggtatcaaagaa
aacatgttagccaaactctacattgaggtcttaggtcttccaaaatcagggccagaggct
aataaacttctcaattacagagcccctactacatccaaaggagactctggagactttgct
cttacagcttattttgtcctcaaaaagagatgcacaagccggggtaatctgagtatcaaa
gaggtcaatgacttcttggactcagtagctatgaataacgccagcaaacagaaggacctt
gtgaagaaaagccttttacatttgattactcaaagctcagctttggaacagaagtggctt
attcgtatgatcctgaaagacatgaaacttgggattagcaaggagaccgttctccaggtt
tttcactcagatgctccagagctctacaatgtcactacagccttggacagggtctgcaga
cagctacatgacccctctatttccttgaatgaggtatccatcggcctgttttctgccttc
aaacccatgctggcggctatcgccaacatccgccaagtggagaaacagatggggaatcag
cccttctatattgagaccaagctggatggtgagcgcattcaacttcataaggatggggat
gtatacaaatactacagccgtaactcatttgaatacacacaacagttcggggcctcacca
ctagagggttctctcacaccattcatccacaatgtctttaaatctcatgttgtcaattgt
atcttggatggagagatgatggcttataaccccaccacagagactttcatgcaaaaaggc
agcaaatttgatatcaagcggttggtggaggactctgatttacagacatgcttttgtgtg
tttgatgtcctgcttgtcaatgaccagaagtttggaaatgagcctctcaagaagcgttac
gacactctccagacagtcttcacacccgtcaaaggccggatccagctggtacagtacact
gaagccaaaaccaggcaggaagtgataaatgcccttaatgaagctattgacaaccgtgaa
gaaggcatcatggtcaaagaccccttgtccatctacaagccagataaacgtggtgaaggc
tggctgaagatcaaacctgaatatgttgatggcctgatggatgaattggatttgctaata
gtgggaggctattgggggaaaggcagacggagtggaatgttgtcccactttctctgtgct
gttgctgaaactccaagtcctggagagaagccaacagtgttccatacactctgtcgaatt
ggatcaggctacaccatgaaggagctctatgagcttggcctgaaactggccgaacactgg
aaagtttatcgcaagagtagtcctccggcaggcattttgtgtggaacagagaagccggag
gtttacattgagccaagaaactcagtgatcattcaagtcaaagctgcagagattgttacc
agtgacatgtacaaaactaattgcactctgcgattccccaggattgagaggatccgagag
gacaaagaatggtatgagtgcatgaccttggatgagataagtcagttccgtgataaagca
tcgggtaaactggcatccaggcaccttcacctccaggaagacgagccggagaagaagaaa
cgcaagctcgcatccaagcccaaaaagaccattggcattgttgaccacttcaaatctcaa
gacctgtccactgtcaccaaagagacagacatgtttgaagatgtggaattctgtgtgatg
agcggaagtaatacgcattcaaaggccgagcttgaaaaggctgtggcccgtggcggaggc
attgtagtccagaaccctggaaaggacacgtactgtgtgattgcaggtgttgagaacgtg
cgggtaaagaacctcattggttcaaaccaacatgacgtagtatgggcttcctggctcctg
gaatgtctggacaggaaacaggtgctaccatggcaaccacgacacatgatccacatgtcc
ccttccacaagggaacactttgctgaagagtatgattgctatggagacagttactacgtc
gacacagatgagcagcagctgagggatgtcttcagcagaatggagcctgttgaagtggat
gcagtatccatagcttcaatcgagcagaagtacggctttgatgacttgcccactagcatg
ttcagaccttaccgtgcctactttgaccgatgtgctgatttgggcaatccagaaagtctt
attaagggtacatgtctgaactttcgggctcttgagtttcgctttcatgggggcacagta
gtagaaagactagaagaaggcatcacacatgtagtcatggcaggggaagagagattattg
gacataaggacacatagacgcctctttactaagaagtttaagatcgttcgagaaacatgg
gtgactgattctattaaagcaggacacgtacttaatgacaatgattaccttgtgtaa
DBGET
integrated database retrieval system
