Pangasianodon hypophthalmus (striped catfish): 113542553
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Entry
113542553 CDS
T05759
Name
(RefSeq) polyadenylate-binding protein 3-like
KO
K13126
polyadenylate-binding protein
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03015
mRNA surveillance pathway
phyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113542553
09123 Folding, sorting and degradation
03018 RNA degradation
113542553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113542553
03041 Spliceosome [BR:
phyp03041
]
113542553
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113542553
mRNA cycle factors
Stress granule specific factors
113542553
Spliceosome [BR:
phyp03041
]
Complex C
Other components
Complex C specific factors
113542553
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM
PABP
DUF1104
Motif
Other DBs
NCBI-GeneID:
113542553
NCBI-ProteinID:
XP_026795957
LinkDB
All DBs
Position
Unknown
AA seq
900 aa
AA seq
DB search
MNSASLQMASLYVGDLHPDVTESMLLEKFSSVGRVLSMRLCKKKRTGTSHQYAFINFQQR
ASAERALELLNFDILLGQPVRIMWSQRDSSLRKNNMGNIFIKNLEKSIDSMALYNTFSTF
GNILSCKVECDENGSRGFGYVHFESAEAAETAIKRLNGMLFNGRKVFITHFKSRQERKAV
NKTTAKDVNSKHEHVIQAQTKEEGHLNLKHKVEQRVNLCVKNLDVTVDDERLRKEFSPFG
TIINSKVIRSNGCSKGFGFVCFSSPEEATKAMREMHGRVLVRNLLHITLLQRKEKRQASL
SSQRTQAFQNPVLNHHQTAPPSGNVMHAIPEAQNPTANNISIQQVKPRPSTNRAKQNVQL
QCFQNMSEVTHLQAIGIGDKKNKTTVTDTVPAAVLTVVPTVISVPAALPTAVKAVPPAVP
AAVPTAVKAVPPAVPAAVPTAVKAIPPAVPAAVLTAVKAIPPAVPAAVLTAVKAIPPAVP
TAVKAITPAVPAAVLTAVKAIPPAVPAAVPTAFKAVPPAVPAAVPTAVKAVPPAVPAAVP
TAVKAITPAVPTAVKAVPPAVPAAVPTAFNKAVLAEVKKTMLAAVPAEVKKAVPTAVPAE
VKKAVPTAVPTEVKKAVPTAVPTEVKKAVPTAVPTAVPTEVKKAVPTAVPAEVRKAVPTA
VPAVVKKAVPTAVPAVVKKAVPTAVPTVVRKAVPPAVPTEVKKAVPTAVPTEVKKAVSAA
VPTEVKKAVPTAVPTVVKKAVLAAVPPAVPSEVKKAVPTAVPATTPVPMRDEQLTKNTMG
GQDTRQSQDTETALPAPSQKPLTIYMLESADVDEQIRMLHEHMLPLVEKIHPNRAKDITW
MIIQGENNYDLLNMIGDPKLLRFQVEQIAAMLQAREAGQDVRFPPPKSKNKKRRKKKQFQ
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtgctagtttgcaaatggcgtcactctatgttggcgatcttcaccctgatgtg
accgagtccatgcttctggagaaattcagctctgtcgggcgagttctctccatgcgcctc
tgcaagaaaaagaggactggcacatcacaccagtatgcttttatcaactttcagcagcgg
gccagtgctgagcgtgctttggagctgctcaattttgacattcttttgggtcagcccgtg
cgcatcatgtggtcccagagggactcatctctaagaaaaaacaacatgggaaatatcttt
atcaagaacctggaaaagtccatcgatagcatggccctttacaacaccttctccaccttt
ggcaacatcctgtcatgcaaggtggagtgcgatgaaaatgggtccagaggattcggatat
gtgcactttgagagtgccgaggctgccgagactgccatcaagaggctgaatggcatgctg
ttcaatggccgcaaagtgtttatcacacacttcaagtcccgccaggagcgcaaggctgta
aacaagacgactgcgaaggatgtcaacagcaagcatgagcatgtgatccaagctcagacg
aaggaagagggacatctcaatctcaaacacaaggtcgagcagcgtgtgaacctgtgtgtg
aagaatctggacgtcactgtggatgatgagcgtctgcgtaaagagttctcaccttttgga
accatcatcaactcgaaggtgataaggtccaatggctgctctaaagggtttgggtttgtg
tgcttctcatctccggaggaggccacaaaggccatgagagagatgcatggaagggtgctg
gtcagaaatctgctgcacatcactctgcttcagcgcaaagagaagagacaggcttccctc
tccagtcagaggacgcaggctttccaaaaccctgtactgaaccaccaccaaactgcacca
ccttctggcaatgtcatgcatgctattcctgaggctcagaaccccactgccaataacata
agcatccagcaggtcaaacctcgcccaagtacaaacagggctaagcagaacgtccagctg
cagtgtttccagaacatgtccgaagtgacacatctgcaggccataggtataggtgataaa
aaaaacaaaactacagtcacagacacagttccagctgcagttctgactgtagttccgact
gtaatttcagttcctgctgcacttcctactgcagttaaagctgtaccacctgcagttcct
gctgcagttcccactgcagttaaagctgtaccacctgcagttcctgctgcagttcccact
gcagttaaagctataccacctgcagttcctgctgcagttctcactgcagttaaagctata
ccacctgcagttcctgctgcagttctcactgcagttaaagctataccacctgcagttccc
actgcagttaaagctataacacctgcagttcctgctgcagttctcactgcagttaaagct
ataccacctgcagttcctgctgcagttcccactgcatttaaagctgtaccacctgcagtt
cctgctgcagttcccactgcagttaaagctgtaccacctgcagttcctgctgcagttccc
actgcagttaaagctataacacctgcagttcccactgcagttaaagctgtaccacctgca
gttcctgctgcagttcccactgcatttaataaagcagtactagctgaagttaaaaaaacc
atgctggctgcagtaccagctgaagttaaaaaagcagtacccactgcagtaccagctgaa
gttaaaaaagcagtacccactgcagtaccaactgaagttaaaaaagcagtacccactgca
gtaccaactgaagttaaaaaagcagtacccactgcagtacccactgcagtaccaactgaa
gttaaaaaagctgtacccactgcagtaccagctgaggttagaaaagcagtacccactgca
gtaccagctgtggttaaaaaagcagtacccactgcagtaccagctgtggttaaaaaagca
gtacccactgcagtaccaactgtggttagaaaagcagtaccccctgcagtaccaactgaa
gttaaaaaagcagtacccactgcagtaccaactgaagttaaaaaagcagtatcggctgca
gtaccgactgaagttaaaaaagcagtacccactgcagtaccaactgtggttaaaaaagca
gtacttgctgcagtacctcctgcagtaccatctgaagttaaaaaagcagtacccactgca
gtaccagctacaactccagtgcctatgagagatgagcagctgaccaagaacacaatggga
ggacaagatacaaggcagtctcaggatacagagactgctctgcctgcaccaagtcagaag
ccactcaccatctacatgttggagtcagctgatgtggatgaacagatcaggatgctgcat
gagcacatgttaccactggtggagaaaatccacccgaatcgagctaaggacatcacctgg
atgataatacaaggcgagaacaactatgacctgctgaatatgattggggaccccaagctt
ctgcgcttccaggtcgagcagattgctgctatgcttcaggcgagggaagctggtcaggac
gtgcgttttcctccacccaagagcaagaataagaagaggagaaagaagaagcaattccaa
taa
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