Pseudoalteromonas issachenkonii: PI2015_1031
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Entry
PI2015_1031 CDS
T04164
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pia
Pseudoalteromonas issachenkonii
Pathway
pia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PI2015_1031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pia03019
]
PI2015_1031
03009 Ribosome biogenesis [BR:
pia03009
]
PI2015_1031
Enzymes [BR:
pia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PI2015_1031
Messenger RNA biogenesis [BR:
pia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PI2015_1031
Ribosome biogenesis [BR:
pia03009
]
Prokaryotic type
rRNA helicases
PI2015_1031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALQ54342
LinkDB
All DBs
Position
I:complement(1130834..1132666)
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AA seq
610 aa
AA seq
DB search
MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHTRGVEVLALYGGQSYSIQLSA
LRRGAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREK
QTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNAHVHKNKAIVRFLEA
EQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIR
HTKSEIAQVELPTAKVVEEKRINALQEKLTLALENKDITFFNEVAANMAQKLELAPEDLA
GALLCLAQQQSPIKVEEVKIQPRERNERNDRNPRSNDRGRRNERPERGGERAERKPRERN
SRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDSHSTVQLPQNMPK
DVLDHFQKVFICKRPMGMTLTQDQGPSEPRGERSERPAGDKKRSFNKDGQRPDKRSGPRK
ERRPVSFTAK
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctctaaatctttctcctgcaattttaaaggcagtt
gaagagttgggttacaagacaccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagcacaaacgggtacaggtaaaacagcagcatttgca
ctgccattactaaataatattgacccgtctgtgaaacagccacagatccttgtactcaca
cctacccgtgagcttgcgatccaagtagctgaggcatttgaacaatatgcaaaacacact
cgtggtgttgaagtattggcactttatggtggccagagctacagcatccagctgagcgca
cttcgtcgtggcgcacagattatcgttgctacaccaggtcgcttaatcgatcacataaac
cgtggcactatcaagtttgatgctttacaagcacttgtacttgatgaagccgatgaaatg
ctacgtatgggctttatcgatgatgtagaaagcatcatggaaaaaacaccgcgtgaaaag
caaacatgtcttttctctgcgactatgcctaagcaaattcaaaacatcagcagcaaatat
atgaataaccctgaacaggttcatatttctgcgcgcaactcaactgtatcatcagttgaa
caagtgttttggaatgcacacgtacataaaaataaagcgattgttcgtttcttagaagct
gaacaatatgaaggtgctattgttttcgtacgtacgcgtaacgatacagtgcaacttgct
gagttattagagcgcgaaggtttctctgcagcgccacttaacggtgacatgaaccagcaa
gcgcgtgagcgcacggttgatcgtttaaaaagcggcatgctaaacgttgttattgcaaca
gacgtagcggcacgtggtcttgatgtagaccgtttaagcttagttatcaactacgacatt
ccacaagactctgaagcctacgttcaccgtatcggccgtacaggtcgtgctggtcgtact
ggtaaagcgattcttttcgttaagcataacgagcgttatttacttaaaaatatcattcgt
catactaaatctgaaatcgcacaagttgaattacctacagctaaagttgttgaagaaaaa
cgtatcaatgccttacaagaaaagcttacgcttgctcttgaaaacaaagatataactttc
ttcaatgaagtggctgccaacatggcacaaaaacttgagcttgctcctgaagacttagcg
ggtgcgttactgtgtttagcacagcaacaatctccaattaaagttgaagaagttaagatt
caaccgcgtgagcgtaacgaacgtaatgatcgtaatcctcgtagcaatgaccgtggtcgt
cgtaacgaacgccctgaacgcggtggtgagcgcgctgagcgtaaaccacgcgagcgtaac
agccgtgatgcaggccctatggatacataccgtatcgaagtaggtcgtgagcatggtgtt
caggttaagaacattgttggcgcaattgctaacgaagcagacatttcaagcaagtttatt
ggtgacattcgtcttcacgacagtcacagtacggtacaattaccgcaaaacatgcctaaa
gatgtacttgatcacttccagaaagtgtttatttgtaaacgcccaatgggtatgacatta
acacaagatcaaggcccttctgagccacgcggcgagcgttctgaacgccctgctggtgac
aagaagcgtagctttaataaagatggtcaacgccctgataagcgtagcggccctcgtaaa
gaacgtcgcccagttagctttaccgctaagtaa
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