Scheffersomyces stipitis: PICST_29472
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Entry
PICST_29472 CDS
T01023
Name
(RefSeq) component of RNA polymerase transcription factor
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pic
Scheffersomyces stipitis
Pathway
pic03022
Basal transcription factors
pic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PICST_29472
09124 Replication and repair
03420 Nucleotide excision repair
PICST_29472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pic03021
]
PICST_29472
03400 DNA repair and recombination proteins [BR:
pic03400
]
PICST_29472
Transcription machinery [BR:
pic03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PICST_29472
DNA repair and recombination proteins [BR:
pic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PICST_29472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
IBR
Motif
Other DBs
NCBI-GeneID:
4836813
NCBI-ProteinID:
XP_001382831
JGI:
29472
UniProt:
A3LN57
LinkDB
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Position
2:complement(353249..354775)
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AA seq
489 aa
AA seq
DB search
MDVSDEEYSSPQKENEGMAKRTRSSGVQPRSGTVSDLKGANGYSWEDEYQRSWDIVKDDE
SGGRSLETIVRTIIENRKKKIMKNPTTPFQRGIIRTLIVIIDGSATMSEKDLRPSRFSMT
LQLLQDFVVEFFDQNPISQLGIILMRNGVSNLVSEVSGSPQYHIDKIRQLKSRQHNRYEP
KGDPSLQNSLEMARSLLKFNFGNNANDTKNSKEVLLIFGALFTSDPGDIHKTIDNLVKDE
IKVKIIGLSAQVAICQDLVNRTNHQQKNISSKNYGVIMNESHFKELFMDCVTPLPITTSQ
VNENAEANKGVPIIKMGFPTKIQPVLTSTLASNEYTIEFPQLSASDPTHGLDDNQVVEIN
NGTDSSIQATNVIGYQCPQCKSKVCNLPTVCPVCGLMLILSTHLARSYHHLVPLVPFKEV
PVSSKYNSKHCFGCLLKFPKGVSNTKSKSSLENMTSSRYRCMKCSHDFCIDCDVFIHETL
HNCPGCENK
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggacgtctcagacgaagagtatctgtctccacagaaggaaaatgagggtatggcaaag
agaacgcgatccagcggagtccagcccaggtctggaaccgttagcgacttgaaaggagct
aatggatattcttgggaagacgagtatcagcgttcatgggatattgtaaaagatgatgag
tccggtggccgttctctagagacaattgtaaggactatcatagagaaccgtaagaaaaaa
atcatgaagaatccgactactccatttcaaagaggcattataaggaccttgattgtcata
attgatggctcagctacgatgctggaaaaggacttaaggccgagccgattttcgatgact
ttacagcttttgcaggattttgtagttgagttttttgaccagaatccaatctctcaattg
ggtataattttgatgcgaaacggtgtctctaatcttgtcagtgaagtcagtggtctgccc
cagtatcatatcgataagatacgacaattgaaatcgagacagcacaaccgttacgaacca
aaaggtgacccttctctccagaactcgttagagatggctcgttccttgcttaaattcaac
ttcggcaataatgccaacgataccaaaaactcgaaagaagtgctccttatctttggagct
ttgttcacgagtgatcctggtgatatacataaaaccatagacaatcttgttaaggacgag
ataaaggtcaaaatcatagggctatctgcacaggtagctatctgccaggacttggtgaat
agaacaaaccatcagcaaaagaatattagctccaaaaattatggtgtcataatgaacgaa
tcgcatttcaaggagttgttcatggactgtgtgactccgttgcccataaccacttcacaa
gtaaacgagaacgctgaagccaacaaaggtgttcctatcataaagatgggattccccacg
aaaatacagcctgttctaacttctacgcttgccagtaacgaatatactattgagttcccg
caactaagtgcttctgatcccacacatggactcgatgataaccaagtagtggaaatcaac
aatggaacagactcttcgatccaggctactaacgtcattggctaccaatgtccgcagtgt
aaaagtaaagtctgtaatttaccaactgtgtgccctgtctgcggactcatgttgattctt
tcgacgcatttggcaagatcctaccatcatttggtaccactagtccctttcaaggaagtt
ccagtcagttcaaagtataatagcaagcattgctttggctgtctacttaagtttccgaag
ggagtgagcaatactaaatccaaaagctcgttagagaatatgaccagttctcgttacaga
tgtatgaagtgtagccatgatttctgtatagactgtgatgtattcatccatgaaactttg
cacaactgtcctggatgtgagaacaagtag
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