Scheffersomyces stipitis: PICST_31270
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Entry
PICST_31270 CDS
T01023
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage and polyadenylation factor I component
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pic
Scheffersomyces stipitis
Pathway
pic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PICST_31270 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pic03021
]
PICST_31270 (PCF11)
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_31270 (PCF11)
Transcription machinery [BR:
pic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PICST_31270 (PCF11)
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
PICST_31270 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
YrbL-PhoP_reg
Motif
Other DBs
NCBI-GeneID:
4838815
NCBI-ProteinID:
XP_001384370
JGI:
31270
UniProt:
A3LT35
LinkDB
All DBs
Position
4:complement(376347..378185)
Genome browser
AA seq
612 aa
AA seq
DB search
MSIRQSETIAQRQVVPEIPTPTTIDGEFKIDLYLQLLQSLTINSRAIITQLSTIAEHHMD
HADEICEAIENRIRKCIPQHKLFAVYLLDSICKNIGNPYNIIFGRNIFKIFTETYSIVTD
NTTRQSLINLFKTWKEIKTSTGSELFPKESIQKIESFIIQATTLASAGKQPIRSEQEVNF
AKLTPDMLLKETKALLVYVINLGRSIDRFGPDLKYLSKEEKDDISNKETRRNQLVGIINN
VADSMIADVTGSDQGGDAAVAPNFNGINNLFAQHVRAYHNELSNVRRELDEHSFFQDSFI
KKFKQRLEQLSEKRALQQKKREAKQRYREYLESNKVVINTTPTAKFFSGLLSDVSADKDL
MTLINGWGKTPVVKASIIVEEKPESEEKEQVNGIENSQGESLEPTPLSDSLGFGSLDFVN
SFVPETTELQEQNQVINKPETDEKSNNKYSEDQDNGDSEKSFSHYKVRARSPELVSPSAS
NRPIVENRDSDENNDEENKIIRPPTPPHHSHSLASHPIESNSQSIDINKYNINAREIANG
SSKGPTSPAIISENELPIRVSLSDYNKSKELFTAPSKNKTAVSDLQGKQRKSSLKRPNSQ
GRGLVKRVRFDV
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcagacaatcagagacaatagcgcaacggcaagtagttcccgaaataccgact
cctactaccattgatggagagtttaagatagacttgtacctccagcttctccagtctttg
actatcaactcacgagccattattacacagctatccactattgcagaacatcatatggac
catgcagatgagatctgtgaagccatagagaaccgaatccggaaatgcattccccagcac
aaactatttgctgtatatctattggattctatatgtaaaaacatcggtaacccctacaac
atcatcttcggcagaaacatcttcaaaatcttcacagaaacatactcaattgtcacggac
aacaccacaagacagagtttgatcaacttgttcaagacatggaaagaaattaagacaagc
acaggatccgaactcttccccaaggagctgatacagaagatagaatctttcattattcaa
gccactactttggcttcagcaggaaagcagccaatcaggctggagcaagaagttaacttt
gctaaactcaccccagatatgcttttgaaagaaaccaaagctcttttggtgtacgtaata
aacttgggaagaagcatagacagattcggcccagacttaaagtacctcctgaaggaagaa
aaggatgatatttccaataaggaaactagacgtaatcaattggtaggaatcatcaacaat
gttgccgacagtatgattgctgatgtcactggtagcgatcaagggggagacgcggctgtt
gcccccaacttcaatggtatcaacaatctttttgcccaacatgtcagagcctatcacaac
gagttgtcgaatgtacgcagagaattagacgaacacagctttttccaggattcctttatc
aagaagttcaaacagagattagaacagctcagcgagaagagagctttacaacaaaaaaag
cgagaggctaaacagagatacagagaatacctcgagtctaataaagtcgttatcaacact
acaccaacagctaaatttttttcgggactactaagtgacgtttcggctgataaggatctc
atgactcttattaatggctggggtaaaacgccagtagtcaaagcaagtataatagtagag
gaaaaacctgagtcggaagaaaaggaacaagtcaacggcatagagaacagtcaaggcgag
agtttagagccaactccactcagcgatagtttaggcttcgggtctcttgacttcgtgaat
tcttttgtcccagaaactacagaattacaagaacagaaccaagtcataaacaaaccggag
acagacgaaaaaagcaataataagtactcagaagatcaagacaatggcgattcggaaaag
tctttttctcattataaagttagagccaggagtccagaacttgtgctgccttcagcatct
aataggccaattgtagaaaacagagacctggatgagaacaatgatgaagaaaacaagatt
attcgtccccctacaccacctcaccatagccattcgttggcttctcatcctattgagtcc
aattctcagtccattgatatcaacaaatataacatcaatgccagagaaatcgcaaatggc
tcatctaaaggtccaacgtctccagcaattatttcagagaatgaattgccaatacgagtc
agccttagtgattataataagagcaaggagctttttacagctccttctaaaaacaagact
gctgtttctgatttacaaggaaaacaacgtaagtcgagcttaaagcgtcctaacagccaa
ggcagaggattggtcaagagggtgaggtttgatgtttga
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