Scheffersomyces stipitis: PICST_41699
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Entry
PICST_41699 CDS
T01023
Name
(RefSeq) general negative regulator of transcription
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pic
Scheffersomyces stipitis
Pathway
pic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PICST_41699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_41699
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PICST_41699
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PICST_41699
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Nup188_SH3-like
PAX
Motif
Other DBs
NCBI-GeneID:
4837361
NCBI-ProteinID:
XP_001382814
JGI:
41699
UniProt:
A3LN24
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Position
2:complement(253197..254948)
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AA seq
557 aa
AA seq
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MEVYKDVERTSKLKTFSNQSILIEEEEEEDYNDMTPEAVEAVKYLKGVIGQIASQTKKLN
NEFEKLANKKLRKNNLSTIESKKEKIQSTVESNKFHTKKLFKVIKYVRANKMSDMNLIWL
IKDDLNNYLENNGNIDFTDDTSIYDDIFNSVVIEDDYSEFNDSEIHSNTSRDPEEVPIKN
GSANNNVLGRLSSGTVETRTQPNHINTSIPASPVNKHMSPELASPAIVRTLKPASTPSKP
VGNLKWSTAAAGISEVSEESHYESSRASAASSVSPKVTNGSTTVAPLSTVKSSSSRVETK
FVHVLENSSLPQSELNLFSDLNLVKLPPGMQDLIISFTSKRNNPEDFKLLCSTRSYNQYV
TPIKKCNFPELDAAGNVGGNNNNKQFKPPVQLFKLSSYWNRIRANDEFDRILEEIQTLSE
KDSGEGNPIANELTLVLFYGFYFGFTPVENLIAESCLFKLGWRPYNTNHSDSSQLNQSQN
QISSPSSNGKVSQSSKDKVTVHSWVRRIKLLSNSEESTAFEIGDYQVFDLSFWEVYIKYG
FTLDLSLCKTEPTSAIC
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggaagtctacaaagatgtcgagagaacatcgaaattgaagacgttctccaaccagtcc
atcttgattgaagaggaggaagaggaggactataacgacatgacgccggaagcagtggaa
gcggtgaaatacttgaaaggtgtcatcggccagattgcgagccagactaagaagttgaat
aacgagttcgagaaattggcgaacaagaagttaagaaagaacaacttgagcactatcgaa
agtaaaaaggagaagatacaatctacagtggaactgaataagttccacaccaaaaagctc
tttaaggtcatcaagtatgtccgagccaacaagatgtccgatatgaacttaatctggttg
ataaaggacgacttgaacaactacttggagaacaacggcaatattgattttacagacgac
acatccatatatgatgacatcttcaatctggtagtcatagaagatgactactccgaattc
aacgactcagaaatacactccaatacaagtagagacccagaagaggtaccaatcaagaac
ggaagtgccaacaacaatgtgctaggaagactaagctctggcactgtggaaacgaggaca
caaccgaaccacatcaacacatccataccagcgtcacctgtaaataaacacatgagccca
gagttagcaagtccagctattgtcagaacacttaagccagcttccacaccttcaaagccc
gtagggaacttaaaatggtctacagcagcagcaggtatcctggaggtttccgaagaaagt
cactacgaaagcagtagagcttcggcagcttcttccgtaagtcccaaagtgactaatggt
tctactactgttgctccattgagcaccgtgaaatcttcttccagtagagtagagaccaaa
ttcgtccatgtcttggagaattcgtcattgccgcaatctgagttgaacttgttcagtgac
ttaaacttagtcaagttgccgccaggaatgcaagatttgataatatcattcacatctaaa
agaaataaccccgaagacttcaagttgctctgtagcacccgcagctacaatcagtacgtg
actccaatcaagaagtgcaacttcccagaacttgatgcagcaggaaatgtaggtggaaac
aacaataataaacaattcaagccaccggtgcagttattcaagttgctgtcgtactggaat
agaatcagagctaatgacgagtttgatagaatcttggaagagatacagacattaagtgaa
aaagactctggcgaaggcaatccaatagcaaacgagttgacgttggtgttgttttatgga
ttctactttggtttcacgcctgtggaaaacttgattgccgaatcgtgcttgttcaagtta
ggctggagaccatacaataccaatcacagcgactcttcacagttaaatcaaagccaaaac
cagatatcgtcaccatccagtaacggaaaggtttcgcagtcttcaaaggacaaagtaaca
gtgcacagctgggttagacgtattaagttattgtcgaattcagaagaatccacagccttt
gagattggagactatcaggtgtttgacttgtctttctgggaagtctacatcaagtacggc
ttcacattggacctcagtctctgtaaaacagagccaaccagcgccatttgctag
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