Scheffersomyces stipitis: PICST_81859
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Entry
PICST_81859 CDS
T01023
Symbol
DNL1
Name
(RefSeq) DNA ligase IV
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pic
Scheffersomyces stipitis
Pathway
pic03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PICST_81859 (DNL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pic03400
]
PICST_81859 (DNL1)
Enzymes [BR:
pic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PICST_81859 (DNL1)
DNA repair and recombination proteins [BR:
pic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
PICST_81859 (DNL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
RNA_ligase
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
4837413
NCBI-ProteinID:
XP_001382860
JGI:
81859
UniProt:
A3LNB9
LinkDB
All DBs
Position
2:complement(514266..517359)
Genome browser
AA seq
939 aa
AA seq
DB search
MSFLDNVEPPTNLQEPQYKFVVDELFTQLDGANRANLGHFRTVSDKKVSVIQTFIKTFRI
HIGDNIFPTARLVFPDKDRRLYYIRDVTLARLIVKMYSIPPESEDYKVLYHWKHGFQKEK
RFTVDSNNLRDLPLRASRIIANRRESTPITTRHSYTVAEMNSKLDSLNDAKKSQEQIAIL
KPLLDSLSIPEIRWLLHIILKKSILVRFENYFLSVWHPDAPALFKVCNNLQKTFNYLVNQ
ETRLNKNDLTVHPTLPFRPQLSFKLTKNYDKLIKDMSMTVPMDVNFQKMFAAKDLAGKFY
MEEKMDGDRMVLHKQGKHFKFYSRRLKDYSFLYGENLEIGSLTKYLSNAFPSKVDSIILD
GEMVAWDFKRNVVLPFGTLKSSAIQESVRQYTTIDQYEQQSSYPFFLVFDILHINGTNLT
NHPLFFRKDILQKIINPIPHRLELLPSIIGSTAEDVQRAMREVVSSRSEGIVVKHLQSKY
FIGERNPHWVKVKPEYLEKFGENLDLTVIGKVPGVKISYMCGLKNDDDQVFYSFCTVANG
FTEDEYDKIERITHNKWIAYKDQLPPSKVLNFGVKKPMHWIHPRDSVVLEIKARSIDCTV
EKTYAVGTTLHNLYCRSIREDKSIHDCTTISEYKQIKAKYSKDLEKSHSANKKRRVLQDS
FVQEQQPKRVKVESDLFSGFDFVILSDNLSRNGDRITREELIILVKKYGGNITNTVHKLG
TRQTIVVTERELPTCKSYFDKGIDLVRPSWLFECINRVAIVPLEPYFIFGSKNMAVFKNR
QDEFGDSYVIHQTVESWDRNRFQRLPETEVDIYRREFLEDVSATEESFPRRFLFHDIKFH
IVTENYMVELLQDRIERFGGEVIAAHAGCSFIVVCGDSENRDRTEVLNKVKAITKDISEK
LQFEDAILTTKIPSVVTEAFVKHCIKRNVLLDSDDYKYI
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcttagataatgtcgagcctcctaccaatctccaggagccgcagtacaagttt
gtggtggatgaacttttcacccaactagacggtgccaacagggccaacttgggccatttc
agaaccgtttccgataaaaaggtgtcagtgatccagacgtttatcaagacctttcggatt
cacatcggtgacaacatattccccacggcccgcttggtgttccccgataaggaccgacgt
ctctactacatcagagatgtaactctagctagactcatagtcaagatgtattccatacct
ccggaatcggaggactacaaagtgttgtaccattggaagcatggtttccagaaggagaaa
agattcacagtagattcaaataacttgcgagatttgccgttgcgggcctcgcgtattatt
gctaatcgtagagaatctacaccaatcacaacacgccattcgtatactgtagccgaaatg
aattccaaattggactcattgaatgatgcaaagaagtctcaagaacagatagccatctta
aagcctttgctagactctctctctattcccgaaatcagatggttgcttcatataattttg
aaaaaatcgattctagtacgatttgagaactactttctcagtgtatggcacccagatgct
ccagccttgttcaaagtgtgtaacaatctccagaagacattcaactatctcgtaaaccaa
gaaactaggttgaataagaatgatctcactgtacacccgacactcccattccgacctcag
ttgtcatttaagttgacaaaaaactatgacaagttgatcaaggatatgtcgatgacagtt
cccatggatgtgaacttccagaagatgttcgcggctaaagatcttgctggaaagttctac
atggaagaaaagatggatggcgacagaatggttttacacaagcaagggaagcacttcaaa
ttttattcgagaaggttgaaagactattcctttctttatggcgagaaccttgaaatcggc
tctcttaccaagtatttatccaatgcattccccagtaaagtggactcgatcattttggat
ggagagatggtggcatgggatttcaagagaaatgtagtgctaccatttgggactttgaaa
tcttcggctattcaggagtccgtcagacagtatacgactatcgatcaatatgaacagcag
tcttcttatccatttttcttagtgtttgatattctccatatcaatggtaccaatttgacg
aatcatccgttattcttcagaaaggatatcctccagaaaattataaacccaataccacat
agactagagcttcttccttcgataattggttcaactgcagaagatgtacaaagagcaatg
agagaagtagttagttccagaagtgaaggcattgtagtaaagcatttgcagctgaagtac
ttcattggggaaagaaacccccactgggtaaaggtcaaaccagagtatcttgagaagttt
ggtgagaatcttgatttgacagtaataggcaaagttcctggtgtgaaaatctcgtatatg
tgtggcttgaaaaatgatgatgaccaggtcttctacagcttctgcactgttgccaatggg
tttacagaagacgagtatgataaaatagaaagaataacccataacaaatggatagcttac
aaggatcaattgcctccctcaaaggtgcttaactttggagtaaagaaaccaatgcactgg
atccaccctcgggattcagttgtattagagataaaggctaggtctattgattgtaccgtt
gagaaaacttatgcggtgggaactacattgcacaatctctactgtcgtagcatacgagaa
gacaaatcaattcacgattgtaccactattagtgagtataagcaaatcaaagctaagtat
tctaaggatttggagaaatctcactctgccaacaagaagcgaagagtgttacaggattct
tttgtgcaagagcaacaaccaaaacgggtcaaagtagagtctgatctattcagcggcttt
gatttcgttattctcagtgacaacttaagtcgcaatggagatagaatcacaagagaagaa
ttgattatattggtaaagaaatacggcgggaatattaccaatacggttcacaaattaggg
accaggcagactattgtagttaccgagagagaattgcctacatgtaaaagctactttgat
aagggtatcgacttagtcagacccagttggctctttgagtgtatcaacagagtggccatt
gtaccccttgagccttactttatctttggatccaagaatatggctgtgttcaagaacagg
caagatgaatttggagacagctatgttattcaccaaacggtagagtcgtgggatcgaaat
agattccaacgtcttcccgagacggaagttgacatctatcgtagagaatttctcgaggat
gttctggctacagaagagtcgtttcctcgtcgctttctatttcacgatatcaaatttcat
atagttacggaaaactatatggtagaattattgcaggatagaatagagaggtttggaggg
gaagtaatcgctgcacatgcggggtgttcgtttattgttgtgtgtggtgattcagagaac
agggatagaactgaggttttgaacaaggttaaggccatcactaaggatatcagtgaaaaa
ttacaatttgaagatgctattttaaccacaaagatccctagtgttgtcactgaagctttt
gtaaagcattgtatcaagagaaatgtacttcttgattcagacgactacaagtacatttga
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