KEGG   Scheffersomyces stipitis: PICST_81859
Entry
PICST_81859       CDS       T01023                                 
Symbol
DNL1
Name
(RefSeq) DNA ligase IV
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
pic  Scheffersomyces stipitis
Pathway
pic03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PICST_81859 (DNL1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pic03400]
    PICST_81859 (DNL1)
Enzymes [BR:pic01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PICST_81859 (DNL1)
DNA repair and recombination proteins [BR:pic03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     PICST_81859 (DNL1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT RNA_ligase DNA_ligase_A_C mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 4837413
NCBI-ProteinID: XP_001382860
JGI: 81859
UniProt: A3LNB9
LinkDB
Position
2:complement(514266..517359)
AA seq 939 aa
MSFLDNVEPPTNLQEPQYKFVVDELFTQLDGANRANLGHFRTVSDKKVSVIQTFIKTFRI
HIGDNIFPTARLVFPDKDRRLYYIRDVTLARLIVKMYSIPPESEDYKVLYHWKHGFQKEK
RFTVDSNNLRDLPLRASRIIANRRESTPITTRHSYTVAEMNSKLDSLNDAKKSQEQIAIL
KPLLDSLSIPEIRWLLHIILKKSILVRFENYFLSVWHPDAPALFKVCNNLQKTFNYLVNQ
ETRLNKNDLTVHPTLPFRPQLSFKLTKNYDKLIKDMSMTVPMDVNFQKMFAAKDLAGKFY
MEEKMDGDRMVLHKQGKHFKFYSRRLKDYSFLYGENLEIGSLTKYLSNAFPSKVDSIILD
GEMVAWDFKRNVVLPFGTLKSSAIQESVRQYTTIDQYEQQSSYPFFLVFDILHINGTNLT
NHPLFFRKDILQKIINPIPHRLELLPSIIGSTAEDVQRAMREVVSSRSEGIVVKHLQSKY
FIGERNPHWVKVKPEYLEKFGENLDLTVIGKVPGVKISYMCGLKNDDDQVFYSFCTVANG
FTEDEYDKIERITHNKWIAYKDQLPPSKVLNFGVKKPMHWIHPRDSVVLEIKARSIDCTV
EKTYAVGTTLHNLYCRSIREDKSIHDCTTISEYKQIKAKYSKDLEKSHSANKKRRVLQDS
FVQEQQPKRVKVESDLFSGFDFVILSDNLSRNGDRITREELIILVKKYGGNITNTVHKLG
TRQTIVVTERELPTCKSYFDKGIDLVRPSWLFECINRVAIVPLEPYFIFGSKNMAVFKNR
QDEFGDSYVIHQTVESWDRNRFQRLPETEVDIYRREFLEDVSATEESFPRRFLFHDIKFH
IVTENYMVELLQDRIERFGGEVIAAHAGCSFIVVCGDSENRDRTEVLNKVKAITKDISEK
LQFEDAILTTKIPSVVTEAFVKHCIKRNVLLDSDDYKYI
NT seq 2820 nt   +upstreamnt  +downstreamnt
atgtctttcttagataatgtcgagcctcctaccaatctccaggagccgcagtacaagttt
gtggtggatgaacttttcacccaactagacggtgccaacagggccaacttgggccatttc
agaaccgtttccgataaaaaggtgtcagtgatccagacgtttatcaagacctttcggatt
cacatcggtgacaacatattccccacggcccgcttggtgttccccgataaggaccgacgt
ctctactacatcagagatgtaactctagctagactcatagtcaagatgtattccatacct
ccggaatcggaggactacaaagtgttgtaccattggaagcatggtttccagaaggagaaa
agattcacagtagattcaaataacttgcgagatttgccgttgcgggcctcgcgtattatt
gctaatcgtagagaatctacaccaatcacaacacgccattcgtatactgtagccgaaatg
aattccaaattggactcattgaatgatgcaaagaagtctcaagaacagatagccatctta
aagcctttgctagactctctctctattcccgaaatcagatggttgcttcatataattttg
aaaaaatcgattctagtacgatttgagaactactttctcagtgtatggcacccagatgct
ccagccttgttcaaagtgtgtaacaatctccagaagacattcaactatctcgtaaaccaa
gaaactaggttgaataagaatgatctcactgtacacccgacactcccattccgacctcag
ttgtcatttaagttgacaaaaaactatgacaagttgatcaaggatatgtcgatgacagtt
cccatggatgtgaacttccagaagatgttcgcggctaaagatcttgctggaaagttctac
atggaagaaaagatggatggcgacagaatggttttacacaagcaagggaagcacttcaaa
ttttattcgagaaggttgaaagactattcctttctttatggcgagaaccttgaaatcggc
tctcttaccaagtatttatccaatgcattccccagtaaagtggactcgatcattttggat
ggagagatggtggcatgggatttcaagagaaatgtagtgctaccatttgggactttgaaa
tcttcggctattcaggagtccgtcagacagtatacgactatcgatcaatatgaacagcag
tcttcttatccatttttcttagtgtttgatattctccatatcaatggtaccaatttgacg
aatcatccgttattcttcagaaaggatatcctccagaaaattataaacccaataccacat
agactagagcttcttccttcgataattggttcaactgcagaagatgtacaaagagcaatg
agagaagtagttagttccagaagtgaaggcattgtagtaaagcatttgcagctgaagtac
ttcattggggaaagaaacccccactgggtaaaggtcaaaccagagtatcttgagaagttt
ggtgagaatcttgatttgacagtaataggcaaagttcctggtgtgaaaatctcgtatatg
tgtggcttgaaaaatgatgatgaccaggtcttctacagcttctgcactgttgccaatggg
tttacagaagacgagtatgataaaatagaaagaataacccataacaaatggatagcttac
aaggatcaattgcctccctcaaaggtgcttaactttggagtaaagaaaccaatgcactgg
atccaccctcgggattcagttgtattagagataaaggctaggtctattgattgtaccgtt
gagaaaacttatgcggtgggaactacattgcacaatctctactgtcgtagcatacgagaa
gacaaatcaattcacgattgtaccactattagtgagtataagcaaatcaaagctaagtat
tctaaggatttggagaaatctcactctgccaacaagaagcgaagagtgttacaggattct
tttgtgcaagagcaacaaccaaaacgggtcaaagtagagtctgatctattcagcggcttt
gatttcgttattctcagtgacaacttaagtcgcaatggagatagaatcacaagagaagaa
ttgattatattggtaaagaaatacggcgggaatattaccaatacggttcacaaattaggg
accaggcagactattgtagttaccgagagagaattgcctacatgtaaaagctactttgat
aagggtatcgacttagtcagacccagttggctctttgagtgtatcaacagagtggccatt
gtaccccttgagccttactttatctttggatccaagaatatggctgtgttcaagaacagg
caagatgaatttggagacagctatgttattcaccaaacggtagagtcgtgggatcgaaat
agattccaacgtcttcccgagacggaagttgacatctatcgtagagaatttctcgaggat
gttctggctacagaagagtcgtttcctcgtcgctttctatttcacgatatcaaatttcat
atagttacggaaaactatatggtagaattattgcaggatagaatagagaggtttggaggg
gaagtaatcgctgcacatgcggggtgttcgtttattgttgtgtgtggtgattcagagaac
agggatagaactgaggttttgaacaaggttaaggccatcactaaggatatcagtgaaaaa
ttacaatttgaagatgctattttaaccacaaagatccctagtgttgtcactgaagctttt
gtaaagcattgtatcaagagaaatgtacttcttgattcagacgactacaagtacatttga

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