Phytophthora infestans: PITG_15486
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Entry
PITG_15486 CDS
T01333
Name
(RefSeq) general transcription factor IIH subunit, putative
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pif
Phytophthora infestans
Pathway
pif03022
Basal transcription factors
pif03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pif00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PITG_15486
09124 Replication and repair
03420 Nucleotide excision repair
PITG_15486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pif03021
]
PITG_15486
03400 DNA repair and recombination proteins [BR:
pif03400
]
PITG_15486
Transcription machinery [BR:
pif03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PITG_15486
DNA repair and recombination proteins [BR:
pif03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PITG_15486
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
9478546
NCBI-ProteinID:
XP_002898428
UniProt:
D0NRC9
LinkDB
All DBs
AA seq
483 aa
AA seq
DB search
MDAFDFLETLPPATLERLYQDPWACQAIFQALPSLAQQFVMRLLPTNSAVPRDLLEQWVV
PIPGETKRMPPQFNAALQKLEGLRVFVQQDGGYKPHPTFQKQLMYALSNLGGSPWERGRL
HLPRDPENTFAAVDLERYARARWDLVLHYMVGSTAVQEPPQSVVDILLRTKLLQASGADS
RALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYCQTGGYYA
VADLTETQRLLLGDFIDFGLLFRKRQNSDRFYTTSLAVNLIFGGSTGQKRSHVSLTSSFA
GVRAGMKSQVADPRQAPTVDHGARLLVVVETNFKIYAYTSSTLHVAMLSVFVDIVARLPN
LAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMRRNSPVIPENIADQIYLWERERNR
VQFLEGILFDGFNTKEDYESVRDYAKGLMVLTWSDPIHFRLSIATAGIDEVRHFIQNQVS
TRG
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggatgccttcgacttcctcgagacgctgccgccggcaacgctggagcgtctgtaccag
gatccatgggcgtgccaggctatcttccaggctctaccatctcttgctcagcagttcgtg
atgcgtcttctgcccacaaactctgccgtaccgcgtgatctactggagcaatgggttgtg
ccaataccaggagaaaccaaacgcatgccgcctcaattcaacgccgcgttgcagaagctg
gagggacttcgagtgtttgtacagcaagatggaggctacaaacctcacccgacgttccag
aagcagctcatgtatgcgctgagcaacttgggcggatctccgtgggaacgtgggcgacta
catcttcctagggacccggagaacactttcgctgcggtggatcttgagcggtacgcgagg
gcacgctgggacttggtgctgcactacatggtggggtctacagcagtacaggagccgcca
cagtccgtggtggacatcctactgcgtacaaaactactgcaggcaagtggggcggactcc
agggcgctgcatatcacagacacgggctacgagttcatgctgaaggacatccacgtgcag
atgtggatctttatgttggaatacattcgcacgctggataacacgggcaccctgaagcag
gaggatattctgcagttcttgttccagatcagctactgccagacgggagggtactacgca
gtagcagatctgacggagacccagcgactattactcggagatttcattgacttcggacta
ctgttccgaaaacgccaaaattcggatcgcttctacacaacaagtctggctgtgaacctc
attttcggtgggtccacgggacagaagcgtagccatgtcagtctcacgagctcgtttgct
ggtgttcgtgccggtatgaagtcgcaagtggcagatccgcgtcaggccccgacagtcgat
cacggagctcgtctgcttgtggtggtggagacaaacttcaagatctacgcgtacacttcg
tcgactcttcatgtggctatgctcagcgtgtttgtggacattgtggcacgactaccgaac
ttggccattggcttcatcactcgagagagtctgcgctctgctctgattcacggcatctcg
gcccagcagatctacgacttcttgatgaagcacgcgcacccgaaaatgcgacgcaacagt
ccagtgatccctgagaatattgctgaccagatctacttgtgggaacgcgagaggaatcgc
gtacagtttctggagggaattctattcgacggtttcaacaccaaggaagactacgagagt
gttcgggactacgccaagggtctcatggtgctcacatggtcggatcccattcacttcagg
ctgtcgattgctactgcaggtattgacgaagtacgccactttatccagaaccaagtatcg
actcgaggataa
DBGET
integrated database retrieval system
