Phytophthora infestans: PITG_17674
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Entry
PITG_17674 CDS
T01333
Name
(RefSeq) 5'-3' exoribonuclease 1, putative
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pif
Phytophthora infestans
Pathway
pif03008
Ribosome biogenesis in eukaryotes
pif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pif00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PITG_17674
09123 Folding, sorting and degradation
03018 RNA degradation
PITG_17674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pif03019
]
PITG_17674
03009 Ribosome biogenesis [BR:
pif03009
]
PITG_17674
03016 Transfer RNA biogenesis [BR:
pif03016
]
PITG_17674
03036 Chromosome and associated proteins [BR:
pif03036
]
PITG_17674
Messenger RNA biogenesis [BR:
pif03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
PITG_17674
mRNA degradation factors
5'-3' decay
5' exonucleases
PITG_17674
Ribosome biogenesis [BR:
pif03009
]
Eukaryotic type
Pre-60S particles
RNases
PITG_17674
Transfer RNA biogenesis [BR:
pif03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
PITG_17674
Chromosome and associated proteins [BR:
pif03036
]
Eukaryotic type
Gene silencing
piRNA pathway
PITG_17674
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
SH3_12
XRN1_D1
FAM110_C
Motif
Other DBs
NCBI-GeneID:
9471230
NCBI-ProteinID:
XP_002896526
UniProt:
D0NWL1
LinkDB
All DBs
AA seq
1480 aa
AA seq
DB search
MGIPRFYRYMSERYPLLNQPISDVSLLPEFDAFYLDMNGIVHNCTHSDAADDALNSLSLE
GQLHGIFTYLDRLITHIIKPKKLVYIAIDGVAPRAKLNQQRSRRFRAGLDRQQAMDKERH
MQIKLQDEKDGHKAKSVASKFDSNCITPGTEFLSKLSQHLVYFVRQKMKSDPLWARLEVF
FSGSEVPGEGEHKIVEFIRHRKMTDDYEANLRHCMYGSDADLMLLGLMTHEPHFTLVRET
VVWGSHHKKVAAKQIEEQQWQLVHLSLFREYLMMEMRVQSPLDGERMLDDFILLTFLLGN
DFIPHSPTLEISEDAIPLLLKVYRELLETHQGSYLTLNGKITNVKLLQELFHVIGNQEEE
ILINRAMEEQRRSGRRGGRQQSKQHDVDATEVQKAIMALRDDDDDAPPPLLDDEDEEEAE
RALLEALDGPEETKMSLELERSDREVLMLAGSESFQETKWNYYARKYGIQRGNGDAGNKD
LEQVKKAYMEALVWCLAYYFQGPQSWAWYYPYHYAPMVSDLTDIEEMIGNVKFDEDPSIA
GPLLPFEQLMSNLPASSSNLVPESYRFLMVSPVSPIKHFYPETFAIDMEGKRNAWEGVNL
LPFIDVALLKQAIAQFCPDSQLTEAERRRNKLQRLPIRIVRDLTVLDTLKSTLPGVVGFP
DVLYCNTRVEEYGLPSIPGGEFKSKLMDGVVLPLAGFPSLYTVTLESTRIASVGLNCFGM
SSRKSSLILQLPASGKLNDNDNATADEINPRELLGTTVLANWPNLHEVLVVGISTLSGEY
RLKQSSRKHNNNRRTQSEAVFTPYGADEKSAWAYYAQTEVVKLLSGRGIPGSGGIDLGRT
GITSVLHVLPLQGMVSNPLTGAIEKKFGETEALVPAQLTVRDRKLLDARFEETETLPLNE
RFPVDSKALITRGQWLGCTAIVRSQDEEQHTVTVHLNTIDQEPPFGYVIVQKITDRYFPG
YLVAQKLGISASTLGLITGSVIIKPLGADIGLNIRYRKELLLPGYCRLVNRDNSNVNPSD
DSNVWRKGDIVKIVGSSGSNGSGDAPSGSSPTRNGSNTAWEYTERAVQLIANFQKEFPEV
IRNLSRLPFATTYQGKDVFGIDDVGRVEVKAEAVKQWIEQQHLGASEHSKHIPITSEYIA
LNAVRAMEAAGTLRAKERAKAAEEQRRAPVVATVTAADLFRPNPLVNQDLTGQEVSQRSS
VNRGAPNLGDRVINISARGVPFGHRGTVVATHVSSRCVEVLFDEGFTGGEALYGTTSLDR
GKIVAWNNLLCVSVPSGAKKQSYNTRSRQGQNGNTQSNSTQRRTSSGVPVISTNTRVAKR
LLKPSDKAPATAPTPLVPPPPPIPSAMPPPPPPEKIQQLIQKWSFDGEVATEASVQSTVT
PQPENATTEEKLAPSVAAFFSAAETGAAPVDPLMGLFPHQYANNSPSLLTPPLPNGASTS
QYTPTYYPTQPPMPGQQPHLFLMPDGSRIPSAWSCVFTEC
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atgggtatcccacgcttctaccggtacatgtcggagcggtatccgctactgaaccaacct
atctcggatgtgtcgctgttgcctgagttcgacgccttctacctcgatatgaacggcatc
gtacacaactgtacgcactcggacgcggcagatgacgcgctcaactcgctgtctttagag
ggccaactgcacggcatcttcacgtatctagatcgcctcatcacgcacatcatcaagccc
aagaagctcgtgtacatcgccatcgacggcgtcgccccacgtgcaaagctcaaccagcag
cgttcgcgtcgattccgcgccggtctggaccgtcaacaagccatggacaaggagagacac
atgcagatcaagctacaggacgagaaagacggccacaaggcgaaatcggtggccagtaag
ttcgattccaactgtatcacgcctggtaccgagtttttgagtaaactttcgcagcattta
gtgtattttgtgcgacaaaagatgaaatcggaccctctgtgggccagactcgaggtcttc
tttagtggcagtgaagtgcctggcgaaggggagcacaagatcgtcgagtttatccgccat
aggaagatgacggacgactacgaggccaatctgcgccactgtatgtacggcagtgacgca
gatctgatgctgctagggctgatgacccacgagccacactttacactcgtgagagagacg
gtagtgtggggcagtcaccataagaaggtcgcagccaagcagatcgaggagcagcagtgg
caactggtgcatctgagtctcttccgagagtatctgatgatggagatgagggtccagtcg
ccactggatggcgaacgcatgctggatgactttattctgctgactttcttgcttggaaac
gactttatccctcacagtccgacgctggagatcagtgaagacgccatcccgttgctattg
aaggtctatcgagagcttctggagactcatcagggcagttatctgacgctgaacgggaag
atcacgaacgtcaagttgctacaggaattgttccatgttattggcaaccaagaagaggag
atcctgatcaatcgcgctatggaggagcagagacgttccggacgacgtggtggacgtcag
cagtccaagcaacatgatgtggacgcgacagaggtccagaaagccatcatggccttacga
gacgatgacgacgatgctccgcctcctttactagacgatgaagacgaagaagaggctgaa
cgggcactgctagaagctctggatggccccgaggaaacgaaaatgtcgcttgaactcgaa
cgcagtgatcgtgaggtcctcatgctggctggaagcgagagtttccaagagaccaagtgg
aattattacgcgagaaagtacggcatccagcgaggcaatggagatgcaggtaataaggat
ctggagcaagtcaagaaggcgtacatggaggcattggtctggtgtctggcctactatttc
caaggtccccagtcgtgggcgtggtactacccctatcactacgcacccatggtctcggat
cttacagatatcgaggagatgattggcaacgtgaaattcgacgaagatccgtcgatcgcc
ggtccgttgctgccgtttgagcagttgatgtcgaacttaccagcctcaagctccaacctt
gtaccggaatcataccggtttcttatggtatcgccggtgtcgccgatcaaacatttctat
ccagagacgttcgctattgatatggaaggcaagcgcaacgcgtgggaaggggtgaatctg
ctgccgtttattgatgtcgcactgctgaagcaagctatagcgcagttttgtcctgattcc
cagcttactgaagccgagagacgacgcaataagctgcagcgcttgcctattcggattgtc
cgagacttgacagtgttggacacgttaaagtccactttacctggagttgtgggcttcccg
gacgtgctctactgcaacactcgcgtggaagaatacgggctgccctctatccctggtggc
gagttcaagagtaaactgatggatggtgtcgtgttaccgcttgctggcttcccgtcactg
tacactgtgactttggagagcacgcggattgctagtgttggcttgaactgcttcggtatg
agctcacgcaagtccagtctcatccttcagctgcctgcttcaggcaagttgaatgacaac
gacaacgctacggctgacgaaatcaatccgcgtgaactgctgggtacgacagtgttagcg
aattggccgaaccttcacgaggtgctagtggtgggtatcagcacgttatccggggaatat
cgtctcaagcagtccagtcgcaaacacaacaacaacagacgtacacagagcgaggctgtc
ttcacgccgtatggagcagacgagaagagtgcgtgggcgtattatgcacagacagaagtg
gtcaagttgctctctggtcgtggcatccccggcagcggagggatcgatctcggcaggact
ggaattactagtgtactgcacgtcttgccgcttcaaggtatggtgtccaaccctcttaca
ggtgccatcgagaagaagtttggagagaccgaagcgctcgtgccagctcagctcacagtt
cgtgatcgtaagctgctggacgcgcggttcgaagagactgagacgctgccgttgaacgag
cgcttccctgtcgactcgaaggcgctgatcacacgtggccaatggctcgggtgtactgct
attgtgcgctctcaagatgaagagcagcacactgtaacggtccatctgaacacgatcgat
caggagcctccgttcggctacgttatcgtgcagaagatcacggatcggtacttccccggc
tacttggtggctcagaagctcggtatctcggcctctacgttgggtttgatcactgggagt
gtgattatcaagcctcttggagctgatattggactgaatatccgttatcgcaaggaactg
ctacttcctggctactgtagactcgtgaatcgcgacaatagcaacgtcaacccgagcgat
gatagcaatgtgtggagaaaaggtgacattgtcaagattgtcggaagcagtggcagtaat
ggcagtggtgatgcaccgtctggctcttctccgacgagaaatggtagcaatacggcgtgg
gagtacacggagcgtgcagtgcagctgattgcgaacttccaaaaggagtttccggaggta
attcgcaacctgagtcgactaccgtttgctacgacatatcaaggcaaggatgtgtttggt
attgacgatgtgggacgtgtagaagtgaaggcagaagccgtcaagcagtggattgagcag
cagcatctgggtgctagtgaacactcgaagcacattcccattacgtccgagtacattgct
cttaatgctgtccgtgccatggaagctgctggaacgttacgtgcgaaggagcgcgccaag
gctgctgaggagcaacgtcgtgctcctgttgttgcaacagtgaccgctgcagatctgttc
cgtcccaacccgttggtgaaccaggatctaacaggacaagaagtatcgcagcgctcgtct
gtgaaccgtggagctccgaatctcggcgaccgagtgatcaatatcagtgcgcgtggcgtg
ccgttcggtcatcgaggtactgtggtggctacacatgtgagtagtagatgtgtcgaggtg
ctgtttgacgaggggtttacgggtggcgaagcgctatacggaacgacgagtctggatcgc
gggaagatcgtggcttggaacaacttgctctgtgtgtcggttccttctggagctaagaaa
cagagctacaatactcgctcaaggcaaggacagaatggaaatactcagagcaatagtact
caacgacgcacgtctagtggagtgccagtcatcagcacgaacactcgtgtggccaagaga
cttctcaagcctagtgataaagctcctgctacagccccgaccccgttggtgcctccacca
cctccaattccgagtgcgatgccgcctccgccacctcccgagaagatccagcagctcatt
caaaagtggagttttgacggcgaagtcgctactgaagcgagtgtacagtctactgtaaca
ccgcagccagagaacgcgactacagaggagaagctcgctccatctgtcgcagcgtttttc
tctgctgctgagactggagctgctccggtggaccctttgatgggcttgttccctcaccaa
tacgctaataattctccctctcttttaacgcctccactaccgaatggcgcctctacgtcg
cagtacacgccaacgtactacccgacgcaacctccgatgccaggacaacagccgcatctt
ttcttgatgcctgacggctcaagaataccctccgcttggagctgcgtcttcactgaatgc
taa
DBGET
integrated database retrieval system
