Pigmentiphaga sp. H8: EGT29_12900
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Entry
EGT29_12900 CDS
T05719
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pig
Pigmentiphaga sp. H8
Pathway
pig03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EGT29_12900 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pig03400
]
EGT29_12900 (ligD)
Enzymes [BR:
pig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EGT29_12900 (ligD)
DNA repair and recombination proteins [BR:
pig03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EGT29_12900 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AZG08690
UniProt:
A0A3G8GKX0
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All DBs
Position
complement(2706588..2709008)
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AA seq
806 aa
AA seq
DB search
MARNDALRTYRAKRDFAHTPEPAQGGKPGAHALSFVVQRHAARRLHYDFRLELDGTLKSW
AVPKGPSLDPGVKRMAVQVEDHPLSYGSFEGRIPEGHYGAGDVAIWDAGTWIPLEDPRKG
YRAGKLKFELRGAKLHGQWALVRMRKAEKQPAWLLIKEKDDYAVTGPEADAEEASAPAPA
YARLPATLEPQLATLVNAPPPDPEHWQYELKFDGYRILARIEGGQVRLYTRTGKDWTRKL
EELRAAIEAMNLADAWLDGEIIVPDDHGIPDFQALQNAFETGSARHAVYYLFDLPFYAGR
DLRRLPLAERRTTLRSLLEDADPARVRFSDAFEAAPRDLVASACQLGFEGVIGKRKDGGY
RSGRSTDWIKLKCQNRQEFVIGGYTDPQGSRAGLGSLLLGVHDEDGRLRYAGNVGSGFDQ
RTLLSLKKHLDELAATASPFERNTKGLGKAHWVRPELLAEVSFAEWTGGGHIRQGVFRGL
RTDKPAGAVTREQAAAPPKESDTMQSNGLPASFRVTHPGRVIDKQSGITKLQLVQCYAAM
APLLLPHLKNRPVALVRAPDGVGGELFFQKHADRAALPGVVRLPREIDPGHPPLMKIDDP
QGLLSAAQMNTIELHTWNGTDDAIGTPDRMTFDLDPGEGVDWPRIREGTQLVHAFLQELG
LPAFLKTSGGKGMHIIVPLRPQYDWDTVKAFSRAIVQHLAQTLPSHFVAKSGPKNRVGRI
FIDYLRNGFGATTVSAWSVRARPGLAVSVPVAWEELDDLSGSAHWTLHTLGDRLATGNTP
WADYERSRISLADAMRRLDFDPGEDA
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggccaggaacgatgccctgcggacctaccgcgccaagcgcgatttcgcccacacgccc
gaacccgcccaagggggcaagcccggcgcgcacgccctgtccttcgtcgtccagcgccat
gcggcgcggcgcctgcactacgacttccggctggaactcgacggcacgctcaagagctgg
gccgtgcccaaggggccaagcctggatcctggcgtcaagcgcatggcggtccaggtcgag
gaccacccgctgtcctacggcagcttcgaaggccgcatccccgagggccactatggcgcc
ggcgacgtcgccatctgggatgccgggacctggattccgctcgaggatccgcgcaagggc
tatcgggccggcaagctcaagttcgagctgcgcggcgccaagctgcacggccagtgggcg
ctggtgcggatgcgcaaggccgagaagcagccggcctggctgttgatcaaggaaaaggac
gactacgcggtcaccggtcccgaggccgatgccgaggaagcgtccgccccggcgccggcc
tacgccaggctgcccgccacgctggaaccgcaattggcgacgctggtgaacgcgccgccg
cccgatcccgaacactggcaatacgaactgaagttcgacggctaccggatcctggcccgc
atcgaaggcggccaggtgcgcctgtacacccgcaccggcaaggactggacgcgcaagctg
gaggaactgcgcgccgccatcgaggccatgaacctggccgacgcctggctggacggcgag
atcatcgtgcccgacgaccacggcatccccgacttccaggccttgcagaacgctttcgag
acgggctccgcgcgccatgccgtctactacctgttcgatctgcctttctacgccggccgc
gacctgcgccgcctgccgctggccgaacggcgcacgacgctgcgcagcctgctggaagac
gccgacccggcgcgcgtgcgtttcagcgacgcgttcgaggccgcgccgcgcgacctggtc
gcctcggcctgccaactgggcttcgaaggcgtgatcggcaagcgcaaggacggcggctac
cgctcgggccgctccaccgactggatcaagctcaagtgccagaaccgccaggaattcgtc
atcggcggctataccgatccccagggctcgcgcgcgggactgggctcgctgctgctgggc
gtgcacgacgaggacgggcggctgcgctacgcgggcaacgtcggctcgggattcgatcag
cgcaccctgctgtccctgaagaagcacctggacgaactggccgcgaccgcctcgccgttc
gagcgcaacacgaaggggctgggcaaggcgcactgggtgcgtcccgaactgctggccgag
gtttccttcgccgaatggaccggcggcggccacatccgccagggcgtcttccgcgggctg
cgcacggacaagcccgccggcgccgtcacccgcgaacaggcggccgcgccgcccaaggag
tccgacaccatgcaaagcaacggcctgcccgcctctttccgcgtgacgcatccgggacgc
gtgatcgacaagcagagcggcatcaccaagctgcaactggtccagtgctacgcggccatg
gcccccttgctgctgccgcacctgaagaaccggcccgtggctctggtgcgggcgcccgac
ggggtgggcggggaactcttcttccagaagcatgccgaccgcgccgcgctgcccggcgtg
gtccggctgccgcgcgagatcgatcccggccatccgccgctgatgaagatcgacgacccg
cagggcctgttgtccgcggcgcagatgaacaccatcgaactgcacacctggaacggcacg
gacgatgccatcggcacgcccgaccgcatgaccttcgacctggacccgggcgaaggcgtg
gactggccgcgcatccgcgaaggcactcagctcgtgcatgccttcctgcaagagctgggg
ctgcccgccttcctgaagaccagcggcggcaagggcatgcacatcatcgtgccgctgcgg
ccgcaatacgattgggacaccgtcaaagccttctcgcgcgccatcgtccagcacctggcg
cagaccctgcccagccatttcgtggccaagagcgggccgaagaaccgggtcggcaggatc
ttcatcgactacctgcgcaacggcttcggcgccaccacggtatcggcctggtcggtgcgc
gcccggccggggctggccgtgtcggtgccggtggcctgggaggaactggacgacttgtcg
ggttcggcccattggacgctgcacaccctgggcgaccggctggccacgggcaacacgccc
tgggccgactacgaacggtcgcggatctcgctggcggacgccatgcggcgcctggatttc
gatccgggcgaagacgcctga
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