KEGG   Pigmentiphaga sp. H8: EGT29_12900
Entry
EGT29_12900       CDS       T05719                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pig  Pigmentiphaga sp. H8
Pathway
pig03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pig00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EGT29_12900 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pig03400]
    EGT29_12900 (ligD)
Enzymes [BR:pig01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EGT29_12900 (ligD)
DNA repair and recombination proteins [BR:pig03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EGT29_12900 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: AZG08690
UniProt: A0A3G8GKX0
LinkDB
Position
complement(2706588..2709008)
AA seq 806 aa
MARNDALRTYRAKRDFAHTPEPAQGGKPGAHALSFVVQRHAARRLHYDFRLELDGTLKSW
AVPKGPSLDPGVKRMAVQVEDHPLSYGSFEGRIPEGHYGAGDVAIWDAGTWIPLEDPRKG
YRAGKLKFELRGAKLHGQWALVRMRKAEKQPAWLLIKEKDDYAVTGPEADAEEASAPAPA
YARLPATLEPQLATLVNAPPPDPEHWQYELKFDGYRILARIEGGQVRLYTRTGKDWTRKL
EELRAAIEAMNLADAWLDGEIIVPDDHGIPDFQALQNAFETGSARHAVYYLFDLPFYAGR
DLRRLPLAERRTTLRSLLEDADPARVRFSDAFEAAPRDLVASACQLGFEGVIGKRKDGGY
RSGRSTDWIKLKCQNRQEFVIGGYTDPQGSRAGLGSLLLGVHDEDGRLRYAGNVGSGFDQ
RTLLSLKKHLDELAATASPFERNTKGLGKAHWVRPELLAEVSFAEWTGGGHIRQGVFRGL
RTDKPAGAVTREQAAAPPKESDTMQSNGLPASFRVTHPGRVIDKQSGITKLQLVQCYAAM
APLLLPHLKNRPVALVRAPDGVGGELFFQKHADRAALPGVVRLPREIDPGHPPLMKIDDP
QGLLSAAQMNTIELHTWNGTDDAIGTPDRMTFDLDPGEGVDWPRIREGTQLVHAFLQELG
LPAFLKTSGGKGMHIIVPLRPQYDWDTVKAFSRAIVQHLAQTLPSHFVAKSGPKNRVGRI
FIDYLRNGFGATTVSAWSVRARPGLAVSVPVAWEELDDLSGSAHWTLHTLGDRLATGNTP
WADYERSRISLADAMRRLDFDPGEDA
NT seq 2421 nt   +upstreamnt  +downstreamnt
atggccaggaacgatgccctgcggacctaccgcgccaagcgcgatttcgcccacacgccc
gaacccgcccaagggggcaagcccggcgcgcacgccctgtccttcgtcgtccagcgccat
gcggcgcggcgcctgcactacgacttccggctggaactcgacggcacgctcaagagctgg
gccgtgcccaaggggccaagcctggatcctggcgtcaagcgcatggcggtccaggtcgag
gaccacccgctgtcctacggcagcttcgaaggccgcatccccgagggccactatggcgcc
ggcgacgtcgccatctgggatgccgggacctggattccgctcgaggatccgcgcaagggc
tatcgggccggcaagctcaagttcgagctgcgcggcgccaagctgcacggccagtgggcg
ctggtgcggatgcgcaaggccgagaagcagccggcctggctgttgatcaaggaaaaggac
gactacgcggtcaccggtcccgaggccgatgccgaggaagcgtccgccccggcgccggcc
tacgccaggctgcccgccacgctggaaccgcaattggcgacgctggtgaacgcgccgccg
cccgatcccgaacactggcaatacgaactgaagttcgacggctaccggatcctggcccgc
atcgaaggcggccaggtgcgcctgtacacccgcaccggcaaggactggacgcgcaagctg
gaggaactgcgcgccgccatcgaggccatgaacctggccgacgcctggctggacggcgag
atcatcgtgcccgacgaccacggcatccccgacttccaggccttgcagaacgctttcgag
acgggctccgcgcgccatgccgtctactacctgttcgatctgcctttctacgccggccgc
gacctgcgccgcctgccgctggccgaacggcgcacgacgctgcgcagcctgctggaagac
gccgacccggcgcgcgtgcgtttcagcgacgcgttcgaggccgcgccgcgcgacctggtc
gcctcggcctgccaactgggcttcgaaggcgtgatcggcaagcgcaaggacggcggctac
cgctcgggccgctccaccgactggatcaagctcaagtgccagaaccgccaggaattcgtc
atcggcggctataccgatccccagggctcgcgcgcgggactgggctcgctgctgctgggc
gtgcacgacgaggacgggcggctgcgctacgcgggcaacgtcggctcgggattcgatcag
cgcaccctgctgtccctgaagaagcacctggacgaactggccgcgaccgcctcgccgttc
gagcgcaacacgaaggggctgggcaaggcgcactgggtgcgtcccgaactgctggccgag
gtttccttcgccgaatggaccggcggcggccacatccgccagggcgtcttccgcgggctg
cgcacggacaagcccgccggcgccgtcacccgcgaacaggcggccgcgccgcccaaggag
tccgacaccatgcaaagcaacggcctgcccgcctctttccgcgtgacgcatccgggacgc
gtgatcgacaagcagagcggcatcaccaagctgcaactggtccagtgctacgcggccatg
gcccccttgctgctgccgcacctgaagaaccggcccgtggctctggtgcgggcgcccgac
ggggtgggcggggaactcttcttccagaagcatgccgaccgcgccgcgctgcccggcgtg
gtccggctgccgcgcgagatcgatcccggccatccgccgctgatgaagatcgacgacccg
cagggcctgttgtccgcggcgcagatgaacaccatcgaactgcacacctggaacggcacg
gacgatgccatcggcacgcccgaccgcatgaccttcgacctggacccgggcgaaggcgtg
gactggccgcgcatccgcgaaggcactcagctcgtgcatgccttcctgcaagagctgggg
ctgcccgccttcctgaagaccagcggcggcaagggcatgcacatcatcgtgccgctgcgg
ccgcaatacgattgggacaccgtcaaagccttctcgcgcgccatcgtccagcacctggcg
cagaccctgcccagccatttcgtggccaagagcgggccgaagaaccgggtcggcaggatc
ttcatcgactacctgcgcaacggcttcggcgccaccacggtatcggcctggtcggtgcgc
gcccggccggggctggccgtgtcggtgccggtggcctgggaggaactggacgacttgtcg
ggttcggcccattggacgctgcacaccctgggcgaccggctggccacgggcaacacgccc
tgggccgactacgaacggtcgcggatctcgctggcggacgccatgcggcgcctggatttc
gatccgggcgaagacgcctga

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