Pseudomonas inefficax: RIN61_19905
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Entry
RIN61_19905 CDS
T09811
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pix
Pseudomonas inefficax
Pathway
pix03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RIN61_19905 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pix03400
]
RIN61_19905 (mfd)
Enzymes [BR:
pix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RIN61_19905 (mfd)
DNA repair and recombination proteins [BR:
pix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RIN61_19905 (mfd)
BRITE hierarchy
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WNN38442
LinkDB
All DBs
Position
complement(4408196..4411645)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRF
FAPDLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPVTTALHRLAPT
RFLLGSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFR
RSAIFQDLASGIIPAGIEYYLPLFFEETSTLFDYLPADTQVFSLPGVEQAAEHFWNDVRG
RYEDRRGDLSRPLLPPAELFLPVEDCFARLKQWPRVVVSTEDLDPGVGRERFPARALPNL
AIEAKANQPLAELANFLDQFPGRVLFTAESAGRREVLLELLDRLKLRPHTVDGWADFITG
SERLAITIAPLDEGLLLDEPAMALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFP
FEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVASAAAELAEGKIDILIGTHKLLQDDV
RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKV
DAGPNGGKIEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEAL
FERLTPQPA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctaccgcaaatgtcggccacggccggcaaacaaacctggggcaat
ctacctggtgccgccctcagcctggccatcgccgaggccgccagcagcgcgggccgcttc
actttgctgctgactgccgacagccaggctgccgatcgtctggaacaggaacttcgcttc
tttgccccggacctgccggtgctgccgttccccgattgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcctctaccgcctgccggag
ctgagccacggcatcctcgtggtgccggtcaccaccgccctgcaccgcctggcgccgacc
cgcttcctgctaggcagcagcctggtgctggacgtgggccagaccatcgatgtggagcag
atgcgcctgcgcctggaggccagtggctatcgctgcgtcgacactgtctacgagcatggc
gagttcgccgtgcgcggcgcgttgatcgacctgttcccgatgggcagcaagctgccctac
cgcatcgacctgttcgatgacgagatagagacgctgcgcaccttcgaccccgagacccag
cgttcgatcgacaaggtggattcggtgcgcctgctgccggcgcgcgagttcccgatgcag
aaagaggaagtgacccgcttcaaggcgcgcttccgcgaacgcttcgatgtcgatttccgt
cgcagcgcgatcttccaggacctggccagcggcatcatccccgccggcatcgagtactac
ctgccgctgttcttcgaagaaacctcgaccctgttcgactacctgccggccgacacccag
gtgttctcgctgcccggtgtggaacaggccgccgaacacttctggaacgacgtgcgcggg
cgttatgaagaccgccgtggcgacctgagccggccgctgctgccgccggccgagctgttc
ctgccagtggaagactgcttcgcccggctcaagcaatggccacgggtagtggtcagcacc
gaagacctcgacccgggcgtgggccgcgagcgcttcccggcgcgcgccctgcccaacctg
gcaatcgaggccaaggccaaccagcccctggccgaactggccaacttcctcgaccagttc
cccggccgggtgttattcaccgccgaatcggcgggccgccgcgaagtgctgctggaactg
ctcgaccggctgaagctgcgcccgcacaccgtcgacggctgggccgacttcatcaccggc
agcgagcgcctggcaatcaccatcgccccgctggacgagggcctgctgctggacgagcca
gccatggccctgatcgccgaaagcccgctgttcggccagcgggtcatgcagcgccggcgc
cgcgacaagcgtggcgaaaccgccaacgacgcggtgatcaagaacctgaccgagctgcgc
gaaggtgcgccggtggtgcacatcgaccatggcgtgggccgctacctgggcctggccacc
ctggaaatcgacggccaggccgccgaattcctcaccctggaatatgccgagggcgccaag
ctgtacgtgcccgtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggcaccactgcaccggctgggctcggaggcctggcagaaggccaagcgcaaagctgcc
gaacaggtgcgcgacgtggccgccgaactgctcgacatctatgcccgccgcgccgcgcgc
aagggctatgcatttgccgacccatccgccgactacgccaccttcagcgccggcttcccg
ttcgaggaaacccccgaccagcaggccgccatcgaagccgtgcgcgcagacatgctggca
cccaagccgatggaccgcctggtgtgtggcgacgtcggcttcggcaagaccgaagtggcc
atgcgcgcggcgttcatcgccgtgcacagcggccgccaggtggccgtgctggtgcccacc
accctgctcgcccaacagcactacaacagcttccgcgaccgcttcgccgactggccggtg
cgcgtggaggtgatgagccgcttcaagtcggccaaggaagtggccagcgccgccgccgag
ctggccgaaggcaagatcgacatcctcatcggcacccacaagctgctgcaggacgatgtg
cgcttcaaggacctgggcctggccatcatcgacgaagagcaccgttttggcgtgcgccag
aaggaacagctcaaggccctgcgcagcgaggtggatatcctcaccctcaccgccacgccg
atcccgcgtacgctgaacatggcagtggcgggcatgcgcgacctgtctatcatcgccacg
ccgccggcgcgccgtttgtcggtacgcaccttcgtcatggagcagaacaagagcacggtc
aaggaagcgctgctgcgtgagttgctgcgcggtggccaggtgtactacctgcacaacgat
gtgaaaaccatcgagaaatgcgccgccgagcttgccgagctggtgcccgaggcacgcatc
ggcatcggccacgggcagatgcgcgagcgcgagctggaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctggtcgcctccaccatcatcgaaaccggcatcgacgtgccc
agcgccaacaccatcgtcatcgagcgcgccgacaagttcggcctggcccagctgcaccag
ctgcgcggccgggttggccgcagccaccaccaggcctatgcctacctgctgacgccaacc
cggcagaaggtcagcgccgacgccgaaaaacgcctggaggcgatcgccaacacccaggac
ctcggcgccggcttcgtgctggccaccaacgacctggaaattcgcggcgccggcgagctg
ctgggcgaaggccagagcgggcagatccaggcggtgggctttaccctgtacatggaaatg
ctcgagcgcgcggtcaaggcgatccgcaagggcacccagcccaacctcgagcagccgctg
ggcggcggcccggaaatcaacctgcgcctgccggcactgatccccgaggactacctgccc
gatgtgcatgcgcggctgatcctgtacaagcgcattgcctcggctgccgacgaagaaggc
ctcaaggacctgcaggtggaaatgatcgaccgcttcggcctgctgcccgagccgaccaag
aacctgatgcgcctgacctcgctcaagctgcacgcggaaaagctcggcatcaagaaggtc
gacgccggccccaacggcggcaagatcgagttcgaagccgagaccccggtcgacccgctg
accctgatcaagctgatccagggccagcccaaacgctacaagttcgaaggcgccacccag
ttccgcttcctggtgcccatggaacgccccgacgaacgcttcaataccctggaggcgctg
ttcgagcgcctgaccccacagcctgcctaa
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integrated database retrieval system
