Pseudomonas izuensis: LAB08_R20560
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Entry
LAB08_R20560 CDS
T08555
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
piz
Pseudomonas izuensis
Pathway
piz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
piz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LAB08_R20560 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
piz03400
]
LAB08_R20560 (ligD)
Enzymes [BR:
piz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LAB08_R20560 (ligD)
DNA repair and recombination proteins [BR:
piz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LAB08_R20560 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BCX67421
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All DBs
Position
2275845..2278484
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AA seq
879 aa
AA seq
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MNKDLDDYNRKRDFSATSEPAAIKRTGKKNARDHALQFCIQKHDASRLHYDFRLELDGAL
KSWAVPKGPSLDPRVKRLAVHVEDHPIDYATFEGSIPEGHYGAGDVIVWDRGVWIPQDDP
AKAYAKGRLKFELQGEKLAGLWNLVRTHMPGKQEQWFLIKHQDGAARAEDDYDVVAAEPN
SVLSDRSIVARTPKAARPANVPKPAKAIKKPATAVRRETSAPLTGAHKARLPDQIKPELA
TLVEKAPDGEWAYEVKFDGYRIMARIDHEEVRLFTRNGHDWTHKLPGQAKALEGLGLESA
WLDGEMVVVDEQGLPDFQALQNAFDAGRSGNILYYLFDLPYLNGVDLREVPVEERRAALA
TVLKTSTDPLLRFSDSFSEDPEALLNSACQMRMEGLIGKRLGSAYVSRRSSDWIKLKCKH
RQEFVIVGFTDPKGARSAFGALLLGLHDRDSGELRYAGKVGTGFTEATLGSIHEQLKPLQ
TKKPAVVNPPGGAEFRGVHWLKPSLLAEVAFAEMTKEGSVRHAVFHGLRDDKPAKDITEE
RPTAVKATSAKPAPAKKAAPAKKTAVAKSPAAQKKAEPAPSQQGLAEGKVRITHPDRVID
ASSGTTKMQLAHYYASVAEWILPQLKDRPVALVRAPDGIAGELFFQKNAERLSIPGITTL
DQQLTGQPMMVINNAEALVGAVQMSTVELHTWNATSDNLDKPDRFVLDLDPDPALPWKRM
VEATQLTLTVLDELGLKAFLKTSGGKGIHLVVPLTRKLGWDEVKDFSHGIVSHMAKLLPE
RFSAVSGPKNRVGRIFIDYLRNGLGATTICAYAVRTREGLPVSVPIFREEVGELKGGNQW
NVHNVHERLAEVGDEPWAEMKKTRQTITAEMRRRVGMKK
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggacctcgacgactacaaccgcaagcgcgatttttcggcgacatcagaaccg
gccgccatcaagcgaaccggcaaaaagaacgccagggatcatgccttgcagttttgcatc
cagaagcacgacgcttcgcgcctgcactacgactttcgcctggagctcgacggcgcgctc
aagagctgggcagtgcccaagggaccgtcactggaccccagggtcaagcgcctggcggtg
cacgtcgaggaccatccgatcgactacgccacgttcgagggcagtatccccgaagggcat
tacggcgccggcgatgtgattgtctgggaccgtggtgtatggatcccccaggacgacccg
gccaaggcctacgccaagggccggctcaagttcgaactgcaaggcgagaagctcgccggt
ttgtggaacctggtgcgcacgcacatgccgggcaagcaggagcagtggttcctgatcaag
catcaggacggggcggccagagccgaagacgattacgacgtggtcgccgccgagccgaac
agcgtgctcagtgatcgcagcatcgtggccaggacaccgaaggctgcccggcccgccaat
gttcccaaacccgccaaggccatcaaaaaaccggccaccgcggttcgccgggaaacgtcc
gcgccactcaccggcgcgcacaaagccaggttgccggaccagatcaagccggaactggcg
acactggtggaaaaggccccggacggcgagtgggcttatgaagtcaaatttgacggctac
cggatcatggcgcgcatcgaccacgaagaggtcaggctcttcactcgcaacggtcacgac
tggacccacaagctgcccggtcaggccaaggcgctggaaggcctggggctggaatcggcc
tggctcgacggtgaaatggtggtggttgacgaacagggactgccggacttccaggcgctg
caaaatgctttcgatgccggacgcagtggcaacatcctctactacctgttcgacttgccc
tatctcaacggcgtggacctgcgcgaagtgccggtcgaagaacgccgggcggcgttggcg
accgtgctcaaaaccagcacagacccgttgctgcgcttttccgacagcttcagcgaagac
cctgaggccctgctcaacagcgcctgccagatgcgcatggaaggcctgatcggcaagcgc
ctgggctcggcctacgtgtcccggcgcagcagcgactggatcaaactcaagtgcaaacat
cggcaggagtttgtcatcgtcggtttcaccgatcccaagggggcacgcagtgccttcggt
gcattgttgttgggtttgcatgatcgcgacagtggcgagttgcgctacgccggcaaggtt
ggcaccggcttcaccgaggccaccctgggcagcattcatgagcaactcaaacccttgcag
acgaaaaaaccggcagtggtcaatccacccggcggtgccgaattcaggggcgtgcattgg
ctcaagcccagcctgctggcggaagtggcctttgctgaaatgaccaaggagggctcggtg
cgacatgcagtgttccatggcctgcgtgacgacaagcctgccaaagacattaccgaggag
cgtccgactgccgtgaaagcgacttctgcgaaacctgcccctgcaaaaaaagcggccccg
gcgaaaaaaaccgccgtcgccaagtcacccgccgcgcaaaagaaagccgagcctgcaccg
tcacaacaaggcctggccgagggcaaggtccgcatcactcacccggaccgcgtcatcgat
gccagcagcggcaccaccaaaatgcaactggcgcactattacgccagcgtcgccgagtgg
attttgccgcagctcaaggatcgcccggtggcgctggtgcgtgcgccagacggcattgcc
ggcgagttgtttttccagaaaaacgccgagcgcctgtccatccccggtatcaccaccctc
gaccagcagctcaccgggcagccgatgatggtgatcaacaatgccgaagcgctggtcggc
gcggttcagatgagcaccgtggaattgcacacctggaacgctacttcggacaacctcgac
aaacccgaccgcttcgtcctcgacctcgacccggacccggcgctgccgtggaaacgcatg
gtcgaagcgacgcagttgaccctgactgtgctcgatgaactggggctcaaggcgtttctc
aagaccagcggcggcaagggcattcacctggtggtgccgctgacccgcaagctcggctgg
gatgaggtcaaggatttcagtcacgggattgtcagccacatggcgaagctgctgccggag
cgattttccgcagtgtcggggccgaagaaccgggtagggcggatcttcatcgattacctg
cgcaacggtctgggcgcgaccaccatctgtgcctacgccgtgcgcacccgggaagggttg
ccggtctcggtgccgatttttcgcgaggaggtgggggaactcaaggggggtaaccagtgg
aacgtgcacaacgtgcatgaacgcctggccgaagtgggcgatgaaccctgggcggagatg
aagaaaacccggcagacgatcacggcggagatgcggcgtcgggtcggaatgaaaaaataa
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