Paenibacillus sp. JDR-2: Pjdr2_3894
Help
Entry
Pjdr2_3894 CDS
T00977
Name
(GenBank) UDP-N-acetylmuramyl-tripeptide synthetase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
pjd
Paenibacillus sp. JDR-2
Pathway
pjd00300
Lysine biosynthesis
pjd00550
Peptidoglycan biosynthesis
pjd01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pjd00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Pjdr2_3894
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Pjdr2_3894
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pjd01011
]
Pjdr2_3894
Enzymes [BR:
pjd01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
Pjdr2_3894
Peptidoglycan biosynthesis and degradation proteins [BR:
pjd01011
]
Precursor biosynthesis
Amino acid ligase
Pjdr2_3894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
LpxD
Motif
Other DBs
NCBI-ProteinID:
ACT02524
LinkDB
All DBs
Position
complement(4440030..4441517)
Genome browser
AA seq
495 aa
AA seq
DB search
MRLSELAELLITARLTGAGDTEIAGIETDSRKVGPGQLFICLPGHTVDGHAYAPQAAAKG
AVAFVVERELELDAPQLIVKDSRLAMAVLADHFYGHPSNALHLIGVTGTNGKTTTTYLIE
QILNDNDRNSGVIGTVEMRYAGKSFPMSGTTPEALQLQQYLSDMRKEGTAYCAIEVSSHA
LEQGRVKGCRFRTAVFTNLTQDHLDYHGTMEKYAAAKGLFFSRLGNEYAAKAEDRAYAVL
NVDDPVSEQFAKLTAAEVITYGIDNHADVRASNIRISAQGTTFRVSTFRGKTDIALQMVG
KFNVYNALAAISAALIEGVALERIKASLEAVPGVPGRVESVQAGQEFAVVVDYAHTPDGL
ENVLRAVKELAPPRIICVFGCGGDRDRTKRPIMGSIAARYADYVLVTSDNPRTEDPDLIL
KDIEAGLLKDGITSDRYELKVDRRAAIEKAVEMASPGDVVLIAGKGHETYQIIGSVTHPF
DDRLVAKEAIRGLLH
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaagcgaattggcagaactgcttattacggcgaggctaacaggagcaggcgat
acggaaatagcggggatcgagacggattcacgcaaagtagggccgggacagctatttatt
tgtcttcccggtcatacggttgacggtcatgcttacgcgcctcaagcggcagccaaaggc
gcagtcgcattcgtcgtcgaacgtgagctggagctggatgctcctcagctgatcgtgaag
gacagccggctggcaatggcggttttagcggatcatttttacggtcatcccagcaacgcc
cttcatctgattggggtaacggggacgaatggcaagacgactacaacgtatttgatcgaa
cagattttaaacgataacgatagaaactccggtgtaatcggtacggtagagatgcgttac
gcgggaaaatcattcccgatgtccggcactacgccggaagcgcttcaactgcagcaatat
ttgtctgacatgcgcaaggaggggacggcctattgcgcgattgaagtctcctcgcatgct
ttggagcaggggcgcgtgaagggctgccggttccgtacggcggtctttacgaacctgacc
caggatcatctggattatcacggaaccatggagaagtatgcggcagcaaaaggactgttc
ttctcacgccttggcaatgaatacgcggcaaaagcagaagatcgcgcttatgcggttctc
aacgtggatgatcctgtatccgaacagttcgccaagctgacagcagctgaagttattact
tacggcatcgacaaccatgctgatgttagggcttccaatatccggatttccgcgcagggc
acaacgtttcgggtaagcacgttccgcggtaagacggatattgcgttgcagatggtcggc
aagtttaacgtctacaatgcgctggcagccatttcggcagcccttatcgaaggcgttgcg
ctagaacggattaaagccagtcttgaagcggttcccggcgtaccgggccgtgttgaatcc
gtgcaggcagggcaggagttcgccgttgttgtggactatgcgcatacgcctgacggtttg
gagaatgtgcttcgtgccgtaaaggagctggctccgccccggatcatatgcgtatttggc
tgcggcggcgaccgtgaccggacgaaacgtccgattatgggctcgattgccgcgcggtac
gcggactacgtgcttgtcacatccgataacccgagaacggaagatccggaccttattctg
aaggatattgaagcaggtttactgaaggacggaataacctccgaccgttacgaactgaag
gttgaccgccgcgccgcgattgaaaaagcggttgaaatggcaagcccgggagatgtagta
ttgattgcggggaaaggtcatgaaacgtatcaaattataggaagcgttacgcatcctttt
gacgaccgtttggtggcaaaagaagcgataaggggattattacattga
DBGET
integrated database retrieval system
