Paenibacillus sp. JDR-2: Pjdr2_4985
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Entry
Pjdr2_4985 CDS
T00977
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pjd
Paenibacillus sp. JDR-2
Pathway
pjd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pjd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Pjdr2_4985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pjd03400
]
Pjdr2_4985
Enzymes [BR:
pjd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Pjdr2_4985
DNA repair and recombination proteins [BR:
pjd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Pjdr2_4985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACT03596
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All DBs
Position
5700076..5700990
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AA seq
304 aa
AA seq
DB search
MNKTSASAKRPAMVMVEGQEITVTNPEKPLWPEHGITKLMYLEKLAMLSPFLLKHCKDRY
LTTIRYPHGYAGKSFYQKNCPEPKPEFVHISESEGISYIQLDNLPTLLWLGNLACLEFHA
SFDRISNPDRPTEWILDLDPSREEEPRIIEAAALVGKLLESLKIKSVPKTSGATGVQIVV
PLQQKYTFDELRGLGQFVGDYLSSAYPQLFTVERLTKNRGDLIYVDYLQHYRGKTISAPY
TPRARYGAPVSTPLKWEEVYAGGIKPADFHLLNIGERLQRFGDLIDLEKPQDLGHVLSFI
HAKK
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagacaagcgcatctgccaagcggcccgcaatggtcatggtggaaggacaggaa
ataacggttacgaatccggagaagcccctttggccggagcatgggatcactaagctgatg
tatttggagaagctcgccatgctgtcgccttttttgctgaagcattgcaaggaccgttat
ttgacgaccatccgttacccgcatggttatgcgggcaaatcgttttatcagaaaaactgc
cctgagccaaaaccggagtttgtccatatctccgaaagcgaagggatctcgtatattcaa
ctcgataacctgccgactttgttatggctcggcaacctggcttgccttgagttccatgca
tccttcgaccggatcagtaatccggaccgccctaccgaatggattctggatcttgatcct
tcccgcgaggaagaaccgcgtatcatcgaagcggctgcgcttgtcgggaagctgctggaa
tcgctgaagatcaaatccgtccccaaaacctctggcgcaacgggcgtccagattgttgta
ccgttacagcagaaatacaccttcgatgaattgaggggcttagggcaattcgtcggcgac
tacctgtccagcgcttatccccagcttttcaccgttgaacggttgaccaaaaaccgcggc
gacctgatttacgtcgattatcttcagcattacagggggaaaacaatctcagccccttat
acgccaagagcgcgctatggcgctcccgtctccacgccgctaaagtgggaagaagtgtac
gccggaggcataaagccggccgacttccatcttctgaacatcggagagcgactgcagcgt
ttcggcgatttgatcgatttggagaagccgcaggatttgggccatgtgctcagctttatc
catgctaaaaaataa
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