Pseudoxanthomonas japonensis: LAG73_12075
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Entry
LAG73_12075 CDS
T07964
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pjp
Pseudoxanthomonas japonensis
Pathway
pjp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pjp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAG73_12075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pjp03019
]
LAG73_12075
03009 Ribosome biogenesis [BR:
pjp03009
]
LAG73_12075
Enzymes [BR:
pjp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LAG73_12075
Messenger RNA biogenesis [BR:
pjp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LAG73_12075
Ribosome biogenesis [BR:
pjp03009
]
Prokaryotic type
rRNA helicases
LAG73_12075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Motif
Other DBs
NCBI-ProteinID:
UBB24115
LinkDB
All DBs
Position
complement(2626883..2628802)
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AA seq
639 aa
AA seq
DB search
MSPESSPSSLVFADLGLSAPVMAAVTEVGYETPSPIQAATIPAVLAGRDVLGQAQTGTGK
TAAFALPLLSSINLAADKPQALVLAPTRELAIQVAEAFQRYAAKMPGFHVLPIYGGQSYY
PQLQALKRGVHVVVGTPGRVIDHLERGSLDLSGLTTLVLDEADEMLRMGFIDDVETVLKK
TPESRQVALFSATMPPAIRRIAQTYLKDPVEVTIAAKTTTSANIRQRYWFVSGLHKLDAL
TRILEAEPFDGMIIFARTKAATEELAGKLQARGLAAAAINGDMQQAQREKTIQQLKDGKL
DVLVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGDAILFVTPREKGM
LRAIERATRQPIQEMQLPSVEAVNDRRVQKFLSRITDTLAAGDTGEFRSLVEAYEQEHNV
PAVDIAAALARLLQGDTPLLLPPEQRRDARVRGERPVREERPVREPRPERAERSERPARR
EHHEHTHERAHDEAAAPRIERPRFDKPPRAEPEVGMETFRIEVGHMHGVKPANIVGAIAN
EAGLEARYIGRIDIHDDHSVLDLPEGMPSEILSHLKKVWVSGQQLRIHRVGEDSGHAPPR
RQQRPEGRPPGKLGGGFAKKARDGAPKPHRKGKPAPRRD
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtcccccgaatcttccccttcttcgctcgttttcgccgatctcggcctgtccgcgccg
gtcatggccgcggtcaccgaagtgggctacgaaaccccatcccccatccaggccgccacc
atcccggcggtgctggccggccgcgacgtgctgggccaggcccagaccggcaccggcaag
accgcggccttcgcgctgccgctgctgtcctccatcaacctggcggccgacaagccgcag
gcactggtcctggcgccgacccgcgaactggcgatccaggtcgccgaggcgttccagcgc
tacgcggcgaagatgcccggtttccacgtcctgccgatctacggcggccagagctactac
ccgcagctgcaggcgctcaagcgcggcgtgcatgtggtggtgggcacccccgggcgggtg
atcgatcacctggagcgcggctcgctggatctgtccggcctgaccacgctggtgctggac
gaagccgatgaaatgctgcgcatgggcttcatcgatgacgtcgagacggtactgaagaag
accccggaatcgcgccaggtcgcgctgttctcggcaaccatgccgccggcgatccggcgc
atcgcccagacctacctgaaggatccggtcgaggtcaccatcgcggccaagaccaccacc
tcggccaacatccgccagcgctactggttcgtcagcggcctgcacaagctcgatgcgctg
actcgaatcctggaagccgagccgttcgacggcatgatcatcttcgcccgcaccaaggcg
gcgaccgaggaactggccggcaagttgcaggcgcgcggcctggccgccgccgccatcaac
ggcgacatgcagcaggcgcagcgcgagaagaccatccagcagttgaaggatggcaagctg
gacgtgctggtggccaccgacgtggccgcgcgcggcctggacgtggagcgcatcagccac
gtgctgaactacgacattccgtacgacaccgaaagctacgtgcaccgcatcggccgcacc
ggccgcgcgggccgcagtggcgatgcgatcctgttcgtcaccccgcgcgagaagggcatg
ctgcgcgccatcgagcgcgccacccgccagccgatccaggaaatgcagttgcccagcgtc
gaggcggtcaacgatcgccgggtgcagaagttcctcagccgcatcaccgacaccctggcc
gccggcgacaccggcgagttccgcagcctggtcgaagcctacgagcaggagcacaacgtg
ccggcggtggacatcgccgccgccctggcgcgactgctgcagggcgacacgccgctgttg
ctgccgccggaacagcggcgcgacgcgcgcgtgcgcggcgaacgtcccgtgcgcgaggaa
cgaccggtgcgcgaaccgcgtccggaacgcgccgaacgcagcgagcggccggcccgtcgc
gagcatcacgaacacacgcacgagcgcgcgcatgacgaggcggccgcgccgcgcatcgag
cgtccgcgcttcgacaagccgccgcgcgccgaacccgaggtcggcatggagaccttccgc
atcgaggtgggtcacatgcacggcgtcaagccggcgaacatcgtcggcgcgatcgccaac
gaggcgggcctggaagcgcgctacatcggccgtatcgacatccacgacgaccattcggtg
ctggacctgcccgaaggcatgccgtccgagatcctgtcgcacctgaagaaggtgtgggtg
tccggccagcagttgcgcatccatcgcgtgggcgaggacagcggccacgcgccgccgcgc
cgccagcagcgtccggaaggacgcccgccgggcaagctgggcggcggtttcgccaagaag
gcgcgcgacggtgcgccgaagccgcaccgcaagggaaagccggcgccgcgccgcgactga
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