Pseudomonas juntendi: L1P09_20305
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Entry
L1P09_20305 CDS
T08267
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pju
Pseudomonas juntendi
Pathway
pju03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pju00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
L1P09_20305 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pju03400
]
L1P09_20305 (sbcB)
Enzymes [BR:
pju01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
L1P09_20305 (sbcB)
DNA repair and recombination proteins [BR:
pju03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
L1P09_20305 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
L1P09_20305 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L1P09_20305 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
DNA_Packaging_2
Motif
Other DBs
NCBI-ProteinID:
UJM11631
LinkDB
All DBs
Position
complement(4372492..4373925)
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AA seq
477 aa
AA seq
DB search
MTPSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPADDILPHPAACLV
TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR
EWQGGNSRWDLIDIVRTAYALRPEGIEWPQQDGRTSLRLELLSKANGIDHGHAHEALSDV
RATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRLLQPLVHVSGRFSAARNYLGVVLPL
AWHPHNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHEDLAEGELPVPLKLVQINRCPV
LAPLSVLRPADQQRLGIDLTLLQSRGEQLADQQAQWQDKLEHIYGKDDFAPSEDPEQQLY
NGFIGDRDRRLCEQVRALEPAQLGRGQWLFDDPRLPELLFRYRARNFPDTLTPEERQRWY
AFCQQRLSQPQWGAPNTLGDFEQARLQAWERADEAGRRVLEAWQLHARNLQQQFAID
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
gtgacccccagcattttctggcacgactacgaaaccaccggcatcaacccgcgctgtgac
cggccgctgcaggtcgccggcctgcgcaccgacttcgacctcaacgagatcgacgagccg
atcagcctttactgccgccccgccgacgatattctgccgcacccggctgcgtgcctggtg
actggcatcaccccgcagttactggccgagcagggcctgtgcgaagccgaattcatgacc
cgcgtgcatgcgcagctggcccaaccaggcacctgtggggcgggctacaacaccctgcgt
ttcgatgacgaagtgacccgctacagcctgtaccggaattttttcgacccctatgcccgt
gaatggcagggcggcaacagccgctgggacctgatcgacatcgtgcgcacggcctacgcc
ctgcgcccggagggcatcgagtggccgcagcaggacgggcgcaccagcctgcgtctggag
ctgttgagcaaggccaacggcattgatcacgggcatgcgcatgaagcgctttccgacgtg
cgggcaaccattgccctggcgcgactgatccggcaaaaacagcccaagttgtatgactgg
ctgttccagttgcgcagcaagcataaagtcatggaacagatccgcttgctacaaccgctg
gtgcatgtatccgggcgtttttcagcagcgcgtaattacctgggggtggtcttgccattg
gcctggcacccgcacaatcgcaatgcactgattgtctgcgacctgcatcaggaaaccctg
ccattactcagggaaagtgctgaagtattgcgtcagcgcttgtacacccggcacgaggat
ttggccgagggcgaactaccggtgccgcttaaactggtacagatcaatcgctgcccggta
cttgcgccactgtcggtattacgccctgccgatcaacagcggctgggtatcgacttgacg
ttgttacaatcgcgcggtgaacagttggccgatcaacaggcgcaatggcaggacaagctg
gagcacatttacggcaaggacgatttcgcgccgagtgaggacccggagcagcagttgtat
aacggttttattggtgaccgtgaccggcgtctatgcgagcaagttcgtgcgctggagccg
gcgcaattgggccgggggcagtggctgttcgatgacccgcgcttgcctgagctgttgttc
cgttaccgggcgcgcaactttccggacaccttgacccccgaggagcgccagcggtggtat
gcgttctgccagcagcgccttagccagccgcagtggggggcgccgaacacattgggtgat
ttcgagcaggcgcgcctgcaagcctgggagcgcgccgacgaggccgggcggcgggtgctg
gaggcatggcaactacatgcccggaacttgcaacaacagtttgcaattgactga
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