Paenibacillus kyungheensis: PQ456_00780
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Entry
PQ456_00780 CDS
T08956
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pka
Paenibacillus kyungheensis
Pathway
pka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PQ456_00780 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pka03019
]
PQ456_00780 (rnr)
03016 Transfer RNA biogenesis [BR:
pka03016
]
PQ456_00780 (rnr)
Enzymes [BR:
pka01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PQ456_00780 (rnr)
Messenger RNA biogenesis [BR:
pka03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PQ456_00780 (rnr)
Transfer RNA biogenesis [BR:
pka03016
]
Prokaryotic type
tRNA degradation factors
PQ456_00780 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
WCT56092
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Position
170768..173530
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AA seq
920 aa
AA seq
DB search
MITEQQVLDVIKSIDYKPMTYQELEQQLEIQAASDFKELVKILNELEHTGVIVQNKSHRY
GLPEHMDLVRGRIQAHAKGFAFLIPEEKEHGDVYINANDMGTAMNGDIVFVKVTSRSTTG
GRMEGEVVRVITRKNTRIVGVFQGLDTYGFIIPDDKRINRDIFVPKESFGGAVEGEKVVA
EIVSYPEGRAAAEGRIVEVLGHKDDPGVDILSVIRKHQLPESFPDEIMDEAQAAPDSITD
AEIVEQGRRDLRDKNIVTIDGEDAKDLDDAVNVERLDNGHYRLGVHIADVGYYVKEGSKL
DIEAYNRGCSVYLVDRVIPMLPHRLSNGICSLHPQVDRLTLSCEMEFDEHMKVVKHEIFT
SVIKTKERMTYTNVRKILEDEDPELLERYAPLVEDFKLMRELAMQLRDMRARRGAVDFDF
DEAKIILDEKGRPIDIVKRERSVAEQIIEEFMLAANETVAEHFSTLQVPFLYRIHENPDQ
EKLQNFLAFASNFGHVIKGTGDHIHPRALQQLLQDIKGEKEETVISTMMLRSMKQAKYSA
DSSGHFGLAADYYSHFTSPIRRYPDLVIHRVIREVIENGGKLKPKRQDYLNSRMADIAQQ
SSERERVAVDAERDTDQLKKAEYMLDKVGEEFEGIISSVTSFGMFIELDNTVEGLIRLGM
LTDDYYHFDDKQMILLGERTSKIYRIGDAITVRVARVNMEDHTIDFELKDMPKSNRPERA
DRGARPPRGDSDRRGGRGGDRGKNKAASKAAKFGKAAKAAKATKAPSTSVAPTTDTGSKK
PGRRKRKSSAAASGQTTAVNVPTTQPRNLDSTTAVNAGEGKPKKAKGISTNAPKSSGKDN
SRNFNFGSGKGGYNSPVESSKKRKGSPAPRRKKIEGPVFDPEAGNIQTSSAKVDTGKTGG
EVKKSRPRKRKPKSTEQKPE
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgattactgaacaacaagtattagatgtaataaagagtatcgattataaaccaatgact
tatcaagagttggagcagcagttagagattcaagcagcttctgattttaaagaattggtc
aaaatattaaatgaacttgagcacacaggagtgatcgtgcagaacaagtctcatcgttat
ggtctacctgaacatatggatctggttcgtggacgtattcaagcccatgccaaaggattc
gcctttctgattcctgaggaaaaagagcatggcgatgtctacattaatgccaatgatatg
ggaacggcaatgaacggtgatatcgtgtttgtgaaagtcacttctcgcagtacgacaggt
ggtcgtatggaaggcgaagtggtccgcgtgattactcgcaaaaatacacgcattgttggt
gtatttcaaggactcgatacgtacgggtttattatccctgatgacaagcggattaaccgc
gatatttttgtgcctaaagagtcattcggtggcgcagttgaaggggaaaaagtggtggct
gaaatcgtcagctatccagaaggcagagcagcagcagaaggacgaatcgttgaagtgttg
ggtcataaagatgatccaggcgtagacattttgtctgttattcgcaagcatcaattacca
gaatcattccctgatgaaattatggacgaagcgcaagcagctcctgattctattacagat
gcagagatcgtcgaacaaggtagacgtgatctacgcgacaaaaatatcgtaacgatcgat
ggtgaagatgccaaagacttggatgatgcggtcaatgtagagcgtctagacaacggacat
taccgtctaggcgttcatattgcagatgtaggctactatgtcaaagagggctctaagctc
gatattgaagcctacaaccgcggatgtagtgtgtatctagtggatcgcgtcattccgatg
ctacctcatcgcttgtctaatggtatctgtagtctacatccacaggtagatcgccttacc
ctttcatgcgaaatggaattcgatgagcatatgaaagtcgtgaagcatgaaatctttacc
agtgtgatcaaaaccaaagagcgtatgacctatacgaatgtacgcaaaattttggaagat
gaagatccagaattgttagaacgttatgctccgcttgtcgaagatttcaaattgatgcgt
gaattggcgatgcagttacgtgatatgcgtgctcgtcgtggcgcagttgattttgatttt
gacgaagcgaagattattttagatgaaaaaggtagacccatcgatatcgtgaagcgtgag
cgttcggtagcagaacagattatcgaagagtttatgctagcagcgaatgagacggtagcc
gagcatttcagtacgcttcaagtgcctttcttgtatcgtattcatgagaatccagatcaa
gagaaattgcagaacttcttagcattcgcttcgaactttggtcatgtgatcaaaggaaca
ggcgatcatattcatccacgtgcattgcaacaattgttgcaagatatcaaaggtgaaaaa
gaagaaacagtgatcagcacaatgatgcttcgttcgatgaaacaagcaaaatactccgca
gacagttcaggtcactttggactagctgcagattattatagtcacttcacatcgccgatt
cgtcgttatcccgatctggttattcaccgcgtgattcgtgaagtgatcgaaaatggtggt
aagctgaagccgaagcgccaggattacctcaattctcgtatggcagatattgcgcaacaa
tcttcagaacgtgagcgtgtggctgtcgatgcagagcgtgataccgatcaattgaaaaaa
gcagaatacatgctggataaagtgggcgaagagttcgaaggtattatcagcagtgtgaca
agcttcggtatgtttatcgagctggataatacagtagaaggtctgatccgcttagggatg
ctgactgacgattattatcattttgacgataaacaaatgatcttgcttggcgaacgtact
tccaaaatctatcgtatcggtgatgcaattacggtacgtgtagcccgcgtgaatatggaa
gatcatacgatcgactttgagctcaaagatatgccgaaaagcaatcgtcctgagcgtgca
gatcgtggtgctcgtcctccacgtggagatagcgaccgtagaggtggacgtggcggagat
cgtggtaaaaacaaagcagctagtaaagcggcgaaattcggtaaagcagcgaaggctgcc
aaagcgaccaaagctcctagcacttcagtagcgcctactacagatacaggcagtaaaaag
ccaggcagacgcaaacgtaaatcatctgcggcagcttccggtcagacgactgcggtaaat
gtaccgactactcaaccacgcaacctggacagtacgacagctgtcaatgcaggtgagggt
aagcctaaaaaagcgaaaggcatttcgaccaatgctccgaaaagttcgggtaaagacaat
tctcgtaactttaacttcggttcaggaaaaggtggatataacagccctgtcgaaagtagc
aaaaagcgtaaaggtagcccggcaccaagacgcaaaaagatagaaggccctgtattcgat
ccagaagcaggcaatatccaaacgtcttcagctaaagtagatacaggtaaaacaggtggc
gaagtgaaaaaaagtcgtccacgcaaacgtaaaccaaaatctaccgagcaaaaacctgaa
taa
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