Paenibacillus kribbensis: B4V02_19120
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Entry
B4V02_19120 CDS
T05249
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pkb
Paenibacillus kribbensis
Pathway
pkb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pkb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B4V02_19120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkb03400
]
B4V02_19120
Enzymes [BR:
pkb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B4V02_19120
DNA repair and recombination proteins [BR:
pkb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B4V02_19120
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ASR48650
UniProt:
A0A222WPZ0
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All DBs
Position
4281631..4282533
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AA seq
300 aa
AA seq
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MGQAVKGTISIEGQEIPITNPNKPLWPEAGVTKALYLRKLAVLAPFLLKYCQHRLLTVIR
WPHGIHGDFFYQKNAPRPRPDYIETTLQDGIEYIVLNKLPQLLWLGNQAALEFHPSLHQA
GSHLPCEWMIDLDPSREVEPRIMEAASIVGEVLASLGLNSIPKTSGATGVQIIVPIRTGV
TFDELRSIGLLVGQFVTEKHPHLFTLERLKKDRGTAIYFDYLQHYQGKTLAAPYTPRARP
GATVSTPLTWEEVRRDVSPLDYHLLNIEERLNQIGDLIGMVPPQPVEDVLKHMRARAHPT
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgggacaagctgttaaaggtacgattagcattgaaggtcaggaaattcccatcaccaac
ccgaataaaccgctgtggccggaagccggcgtgaccaaagcgctatatcttcgcaagctc
gcggtattggctcctttcctgctcaaatattgccagcatcgcctgctaaccgtcatccgc
tggccacatggtatccacggagattttttttatcagaaaaatgccccgcgccctcggccg
gattatattgaaaccacgctgcaggacggtattgaatatattgtgcttaacaagctgcct
caattgctatggctcggcaatcaggctgcgctggaatttcatccctccctgcatcaagcg
ggaagccatttgccctgtgaatggatgattgatttggacccatccagagaagtggagcca
cgcattatggaggctgcctccatcgtcggtgaagtgctggcttcgcttggtttgaattcg
atccccaaaacatccggagccaccggagtgcaaattatcgtcccgattcgaacaggtgta
accttcgacgagcttcgcagcatcggactgctggtcggacagtttgtgacggaaaaacac
ccgcatctgttcacactggaacggttaaagaaggatcgtggaacagccatctattttgat
tatttacagcattatcagggaaaaacgctggctgctccctataccccgcgggcacgcccc
ggtgctacggtatccactccgcttacatgggaagaggtacgacgggatgtatcaccgctt
gactatcatttgctgaatattgaggaacgactaaatcagataggcgacttgatcggaatg
gttcctccccagcctgtcgaggatgttctaaagcatatgcgtgccagggcccatccaacc
tga
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