Pseudomonas knackmussii: PKB_1357
Help
Entry
PKB_1357 CDS
T03081
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pkc
Pseudomonas knackmussii
Brite
KEGG Orthology (KO) [BR:
pkc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pkc03009
]
PKB_1357 (rlmD)
Enzymes [BR:
pkc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PKB_1357 (rlmD)
Ribosome biogenesis [BR:
pkc03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PKB_1357 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
Methyltransf_11
PCMT
MTS
Cons_hypoth95
Methyltransf_23
Met_10
Methyltransf_15
Methyltransf_12
Methyltransf_4
RrnaAD
Methyltr_RsmB-F
Motif
Other DBs
NCBI-ProteinID:
CDF82720
UniProt:
A0A024HCC2
LinkDB
All DBs
Position
1410361..1411725
Genome browser
AA seq
454 aa
AA seq
DB search
MAKQRGGLRFQPSGGARSSGVPVGKKQRLQIERLAHDGRGIAHLEGRTWFVAGALPGEAV
EARVLAARSQVVDARTERVLNAAEMRRQAPCPVAGQCGGCTLQHLPHADQLALKQRTLAE
QLQRFGDIVPDEWAAPLVGPEFGYRRRARIAVRWDVKAKRLEVGFRAAASQAIVAFDDCL
VLVPPLQVLARELPELLQGFAKPQAIGHVELFHGTASALLLRHTEPLPAGDLERLQAFCS
ARDVQLWLQGDGEPSPADGAGQLGYRLESWDLTLAYRPGDFVQVNEPVNLAMVEQALDWL
APAPTERVLDLFCGLGNFALPLARRAAEVVGVEGVDSMVARATANARANGLDNAAFHQAD
LAKPLNEASWYTGNAKQGFPAVLLDPPRDGAFEAVRGMRDLGARRILYVSCNPATLARDA
GELARQGYRLKRAGILDMFPQTAHVEAMALFEAG
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcagagaggcggacttcgtttccagcccagcggcggtgcgcgctccagtggc
gtgccggtgggcaagaagcaacgtctgcagattgaacgcctggcccatgacggccggggc
atcgcccatcttgaagggcgcacctggttcgtcgccggcgcgctgccgggcgaagctgtg
gaagcgcgcgtcctggcggcgcgcagccaggtcgtcgacgcgcgcaccgagcgtgtgctt
aacgccgccgaaatgcgtcgacaagcgccctgtccggtcgctggccagtgtggcggctgt
accttgcagcacctgccgcatgccgatcagctggcgctcaagcaacgcaccctggccgag
cagctgcaacgcttcggcgatatcgtccccgacgagtgggcggcgccgctggtcggtccg
gaattcggctaccgccgccgcgcccgcattgccgtgcgctgggacgtcaaggccaagcgc
ctggaggtaggtttccgtgctgccgcgagccaagcgatcgtcgccttcgacgactgcctg
gtgctggtgcctccgttgcaggtcctggcccgcgagctgcccgaactgctgcagggcttc
gccaagccgcaggcgatcggccacgtcgaactcttccacggcactgccagtgctttgctg
ctgcggcataccgaaccactgccggccggcgacctcgaacgcctgcaggcgttctgttcg
gcacgggatgtgcagctctggctgcagggcgacggagaaccgtcgccggcagacggtgcc
gggcagcttggctatcgtctggagtcctgggatctgaccctggcctatcgccccggcgat
ttcgtccaggtcaatgagccggtcaacctggcgatggtcgagcaggcactggactggctg
gcccccgcaccgacggaacgggtgctagacctgttctgtggcctgggcaatttcgccctg
ccgctggcgcggcgtgccgccgaagtggtgggtgtggaaggcgtcgacagcatggttgcg
cgggccacggccaacgcccgggccaacggcctggacaatgccgcgttccaccaggcggac
ctggcgaagccgctgaacgaggcgtcctggtacaccgggaacgccaaacaaggattcccc
gccgtactgctcgacccgccgcgcgatggcgcgttcgaggcagtgcgcgggatgcgcgac
ctgggcgcccggcggatactgtacgtatcctgcaacccggcgaccctggcgcgcgacgcc
ggcgaactggcccgacagggctatcgcctgaagcgtgccggaatcctcgacatgttcccg
cagacggcgcatgtggaggcgatggctctgttcgaggcgggctag
DBGET
integrated database retrieval system
