Paracoccus kondratievae: F8A10_12435
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Entry
F8A10_12435 CDS
T06245
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pkd
Paracoccus kondratievae
Pathway
pkd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pkd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F8A10_12435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pkd03019
]
F8A10_12435
Enzymes [BR:
pkd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F8A10_12435
Messenger RNA biogenesis [BR:
pkd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F8A10_12435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DEDD_Tnp_IS110
ABC_transp_aux
AAA_19
P-loop_SecA
CMS1
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QFQ88313
LinkDB
All DBs
Position
2:222353..223798
Genome browser
AA seq
481 aa
AA seq
DB search
MRADTRATWLKDVMTNESFRTNRPGNPRGPRAGKPHFRGGKPGAPHRRHQSEPEEKFVRR
AIPEIDTPFTRMGIDPRVAINLSGLGIENPSPIQEKSIPAIVEGRDLLGLAQTGTGKTAA
FGLPMLTRLLNIGRKPEPRTSRALILAPTRELATQIAENIDNYAIGTPIRQYRVVGGASI
NVQVQRLERGVDVLIATPGRLIDLIDRGAIDLSQTRYLVLDEADQMLDIGFIHALRRIAK
MLPRERQTLLFSATMPKLMEELADSYLTDPVRVAVNPPGQAAEKIEQGVHFVNQGDKATL
LAEYLSKHRDELAIVFGRTKHGSEKLSKLLEKWGFKVAAIHGNKSQGQRERALASFRAGD
TKVLVATDVAARGLDIPEVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAIAFCSPAEIG
ELRAIERAMKAKIAIVGGEEPFEAAKIRERGGPAGRPQGAGAARKRPARRPSRAPKAAQR
A
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccgatacgcgggcgacctggctgaaagacgttatgactaacgaatccttccgt
acgaaccgtccgggcaacccccgtggcccgcgcgccggcaaaccgcatttccgtggtggt
aaacccggtgcccctcatcgccgccatcaaagcgagccggaagaaaagttcgtccgccgc
gccatccccgagatcgacacccccttcacccggatggggatcgatccgcgcgtggcgatc
aacctgtcgggactggggatcgaaaacccctcacccattcaggaaaaatccattcctgcg
atcgtcgagggtcgcgaccttttgggccttgcccagaccggcaccggcaagacggcggct
ttcggcctgccgatgctgacccggctgctgaacatcggccgcaaacccgaaccgcgcacc
tcccgcgccctgatccttgcgcccacgcgtgagcttgcgacgcagattgccgagaatatc
gacaactatgccatcggcaccccgatccggcagtaccgcgtcgtgggcggcgcctcgatc
aacgttcaggtccagcgccttgaacgcggcgtcgatgtgctgattgcaacgccgggccgc
ctgatcgaccttatcgaccgcggtgccattgacctgtcgcagaccagatatctggtgctg
gacgaggccgaccagatgctggacatcggctttatccacgcgctgcgtcgcatcgccaag
atgctgccgcgcgaacgccagacgctgcttttctcggccaccatgcctaagctgatggaa
gagctggccgacagctatctgaccgatcccgtgcgcgttgccgtgaacccgcccggtcag
gccgctgaaaagattgaacagggcgtgcatttcgtcaatcagggcgacaaggcgacgctg
ctggcagagtatctgtcaaagcaccgcgacgagctggccattgtctttggccgcaccaag
cacgggtcggaaaagctgtcgaaactgcttgagaaatggggctttaaggtcgcagccatc
cacggcaacaaaagccagggtcagcgcgagcgcgccttggccagcttccgtgccggtgac
accaaggttctcgtggcgaccgatgtggcggcacgcggcctcgatatccccgaggtggcg
catgtctataactatgacctgccgaacgtgcctgaaaactatgtgcaccgcattggccgc
actgcccgcgccggacgtgacgggcgcgccatcgccttctgctctcctgccgagatcgga
gaactgcgggccatcgaaagggcaatgaaggccaaaatcgccattgtgggtggtgaagag
ccctttgaggccgccaagattcgcgaacggggcggcccggccggacgccctcagggtgct
ggcgcggcacgcaaacgtcccgcgcgtcggccctcgcgcgcgccgaaagccgctcaacgg
gcctga
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